View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_high_29 (Length: 250)
Name: NF11527_high_29
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 60 - 240
Target Start/End: Complemental strand, 37347516 - 37347336
Alignment:
| Q |
60 |
ccaattaaaatatgatattattttatatgtatttcagggagattaggttcaaacacaagacaatcaggggatattttgatcaatggcaacaaacaagcat |
159 |
Q |
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| T |
37347516 |
ccaattaaaatatgatattattttatatctatttcagggagattaggttcaaacacaagacaatcaggggatattttgatcaatggcaacaaacaagcat |
37347417 |
T |
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| Q |
160 |
tggcttatggaacctcggtatatataaaagctaaaatactttaataaaaatgaattgtagtctctaaatcatcaatctctg |
240 |
Q |
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| T |
37347416 |
tggcttatggaacctcggtatatataaaatctaaaatactttaataaaaataaattgtagtctctaaatcaccaatctctg |
37347336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 37321355 - 37321440
Alignment:
| Q |
94 |
cagggagattaggttcaaacacaagacaatcaggggatattttgatcaatggcaacaaacaagcattggcttatggaacctcggta |
179 |
Q |
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| T |
37321355 |
cagggagattaggctcaaacacaagacaaacaggggaaattctgatcaatggtcacaaacaagaactttcttatggaacctcggta |
37321440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 37330273 - 37330361
Alignment:
| Q |
91 |
tttcagggagattaggttcaaacacaagacaatcaggggatattttgatcaatggcaacaaacaagcattggcttatggaacctcggta |
179 |
Q |
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| T |
37330273 |
tttcagggagattaagctcaaacacaagacaaataggggaaattctgatcaatggtcacaaacaagaactgtcttatgggacctcggta |
37330361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 37297947 - 37298006
Alignment:
| Q |
120 |
caatcaggggatattttgatcaatggcaacaaacaagcattggcttatggaacctcggta |
179 |
Q |
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| T |
37297947 |
caatcagggaaaattctaatcaatggcaaaaaacaagcactggcttatggaacatcggta |
37298006 |
T |
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