View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_high_30 (Length: 249)
Name: NF11527_high_30
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 49 - 233
Target Start/End: Original strand, 2361164 - 2361348
Alignment:
| Q |
49 |
acgtggcagctgcacttacaggtggagttatgaaattagttagcgcgtctggtccacgcaacttaatagccgcgttgtcgtacacaatagcagcttcttc |
148 |
Q |
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| T |
2361164 |
acgtggcagctgcacttacaggtggagttatgaaattagttagcgcgtctggtccacgcaacttaatagccgcgttgtcgtacacaatagcagcttcttc |
2361263 |
T |
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| Q |
149 |
agccgtttgaaatgtaccaagccacacacgcactccacgcgccgggtctcttatctccgccgcccattttccccatggtctctgc |
233 |
Q |
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| T |
2361264 |
agccgtttgaaatgtaccaagccacacacgcactccacgcgccgggtctcttatctccgccgcccattttccccatggtctctgc |
2361348 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 41747998 - 41747958
Alignment:
| Q |
192 |
gggtctcttatctccgccgcccattttccccatggtctctg |
232 |
Q |
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| T |
41747998 |
gggtctcttatctccgccgcccattttccccaaggtctctg |
41747958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 41197611 - 41197538
Alignment:
| Q |
93 |
gcgtctggtccacgcaacttaatagccgcgttgtcgtacacaatagcagcttcttcagccgtttgaaatgtacc |
166 |
Q |
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| T |
41197611 |
gcgtctggtccacgaagcttaatagcggcattgtcataaaccatagcagcttcttctgcagtttcaaaagtacc |
41197538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 43490153 - 43490190
Alignment:
| Q |
195 |
tctcttatctccgccgcccattttccccatggtctctg |
232 |
Q |
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| T |
43490153 |
tctcttatctctgctgcccattttccccatggtctctg |
43490190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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