View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_high_31 (Length: 247)
Name: NF11527_high_31
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 15422116 - 15421872
Alignment:
| Q |
1 |
caatggtctaacttcaaaacttgtaaattccacaacttacatatggattttggaagagtttcaaatttaccatcagaaagatccaagtaccttaaactct |
100 |
Q |
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| T |
15422116 |
caatggtctaatttcaaaacttgtaaattccacaacttacatatggattttggaagagtttcaaatttaccatcagaaagatccaagtaccttaaactct |
15422017 |
T |
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| Q |
101 |
tcaaatgaccaattgaagatgacagtttaggtaaggtcaccttaagcacatgtaaagaacgaaaattgaatacattg----gagcaaaatcatatgatct |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |
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| T |
15422016 |
tcaaatgaccaattgaagatgacagtttaggtaaggtcaccttaagcacatgtaaagaacgaaaattgaatacattggatagagcaaaatcataagctct |
15421917 |
T |
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| Q |
197 |
tgtgtagaaggtcctcggtgatttgatgttacgcatccaaattga |
241 |
Q |
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| T |
15421916 |
tgtgtagaaggtcctcgatgatttgatgttacgcatccaaattga |
15421872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 15429992 - 15429748
Alignment:
| Q |
1 |
caatggtctaacttcaaaacttgtaaattccacaacttacatatggattttggaagagtttcaaatttaccatcagaaagatccaagtaccttaaactct |
100 |
Q |
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|||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
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| T |
15429992 |
caatagtctaattttaaaatttgtaaattccacaacttacatatggattttggaagagtttcaaattgaccatgagaaagatccaaataccttaaactct |
15429893 |
T |
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| Q |
101 |
tcaaatgaccaattgaagatgacagtttaggtaaggtcaccttaagcacatgtaaagaacgaaaattgaatacattg----gagcaaaatcatatgatct |
196 |
Q |
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| T |
15429892 |
tcaaatgaccaattgaagatgacactttaggtaaagtcaccttgagcacatgtaaagaacgaaaattggatatattggattgagcaaaatcaaatgaact |
15429793 |
T |
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| Q |
197 |
tgtgtagaaggtcctcggtgatttgatgttacgcatccaaattga |
241 |
Q |
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| T |
15429792 |
tgtgtagcaggtcctcggtgatttgatgttacgcatgaaaattga |
15429748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 15082671 - 15082767
Alignment:
| Q |
13 |
ttcaaaacttgtaaattccacaacttacatatggattttggaagagtttcaaatttaccatcagaaagatccaagtaccttaaactcttcaaatgac |
109 |
Q |
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| T |
15082671 |
ttcaaaatttgtaaattccacaacttacatagagatgccggaagagtttcaaattcaccgacagaaagatccaagtaccttaaaaacttcaaatgac |
15082767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 15335341 - 15335464
Alignment:
| Q |
1 |
caatggtctaacttcaaaacttgtaaattccacaacttacatatggattttggaagagtttcaaatttaccatcagaaagatccaagtaccttaaactct |
100 |
Q |
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|||| |||||||||||||| |||||||||||||| |||||| ||||||||| ||||||| || ||||||||||| |||| ||||||||||| | || |
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| T |
15335341 |
caattgtctaacttcaaaatctgtaaattccacaatgtacataaggattttggtagagttttgaacttaccatcagatagattcaagtaccttagatact |
15335440 |
T |
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| Q |
101 |
tcaaatgaccaattgaagatgaca |
124 |
Q |
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| | | ||||||||||||||||| |
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| T |
15335441 |
ttagactaccaattgaagatgaca |
15335464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 15320583 - 15320641
Alignment:
| Q |
7 |
tctaacttcaaaacttgtaaattccacaacttacatatggattttggaagagtttcaaa |
65 |
Q |
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|||||||| |||| ||| ||||||||||||| ||||||||||| |||||| ||||||| |
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| T |
15320583 |
tctaactttaaaatttgcaaattccacaactgacatatggattccggaagaatttcaaa |
15320641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 8186711 - 8186800
Alignment:
| Q |
33 |
caacttacatatggattttggaagagtttcaaatttaccatcagaaagatccaagtaccttaaactcttcaaatgaccaattgaagatga |
122 |
Q |
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||||||||||| ||||| ||||||||||| || | ||| | |||||||| ||||||||||| | |||||| |||||||||||||||| |
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| T |
8186711 |
caacttacataaggattctggaagagtttggaagtcaccgttagaaagattcaagtaccttagatatttcaaacgaccaattgaagatga |
8186800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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