View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_high_34 (Length: 239)
Name: NF11527_high_34
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_high_34 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 15207314 - 15207552
Alignment:
| Q |
1 |
ggtgtgtatagtttaacagacacacaggttttagaaggcatgcttagtaacatgaaaggagtaagacagtttcgttttgaccagttatcgagtgaattag |
100 |
Q |
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| T |
15207314 |
ggtgtgtatagtttaacagacacacaggttttagaaggcatgcttagtaacatgaaaggagtaagacagtttcgttttgaccagttatcgagtgaattag |
15207413 |
T |
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| Q |
101 |
atgttctgtttgatcctcaagttctcagtccaaggtccttggttgatgggatccatggggaaagcaatggtaagtttgaattacatgttagaagccctta |
200 |
Q |
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| T |
15207414 |
atgttctgtttgatcctcaagttctcagtccaagatccttggttgatgggatccatggggaaagcaatggtaagtttgaattacatgttagaagccctta |
15207513 |
T |
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| Q |
201 |
tacaagaatggcttctaaagatgttgaagagacctcgac |
239 |
Q |
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| T |
15207514 |
tacaagaatggcttctaaagatgttgaagagacctcgac |
15207552 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 38744895 - 38744934
Alignment:
| Q |
184 |
catgttagaagcccttatacaagaatggcttctaaagatg |
223 |
Q |
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| T |
38744895 |
catgttagaagcccttatgcgagaatggcttctaaagatg |
38744934 |
T |
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