View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_high_6 (Length: 600)
Name: NF11527_high_6
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 33239866 - 33240311
Alignment:
| Q |
1 |
catatttcaatcgaaattccagaaaggatttgaaatatttgcttgctgttctttgtgttttgataaaaatatgaaatagtttggttttcatataacattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33239866 |
catatttcaatcgaaattccagaaaggatttgaaatatttgcttgctgttctttgtgttttgataaaaatatgaaatagtttggttttcatataacattt |
33239965 |
T |
|
| Q |
101 |
caaatttttatttgtttcgtttctttgataatcagatcaaaagtttccatctttctgcattactattgagaaaggcacgttacactaaaactaacaacaa |
200 |
Q |
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| T |
33239966 |
caaatttttatttgtttcttttctttgataatcagatcaaaagtttccatctttctgcattactattgagaaaggcacgttacactaaaactaacaacaa |
33240065 |
T |
|
| Q |
201 |
taaaaggaaattgggatgtagttataccaaattcacaagcttctctttcaccaacttgcttcaactcaaacaaaacaactatttctccaaagctaccctt |
300 |
Q |
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| T |
33240066 |
taaaaggaaattgggatgtagttataccaaattcacaagcttctctttcaccaacttgcttcaactcaaacaaaacaactatttctccaaagctaccctt |
33240165 |
T |
|
| Q |
301 |
ctttctgcttttgtcataatatgcaattataaattttctataatgtaatatactatagtatattgagaatctatatgcaagttgcaacacacaataatgt |
400 |
Q |
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| T |
33240166 |
ctttctgcttttgtcataatatgcaattataaattttctataatgtaatatactatagtatattgagaatctatatgcaagttgcaacacacaataatgt |
33240265 |
T |
|
| Q |
401 |
tataaactattttatgtacaagactgtgtgtaagtttacttgtgctc |
447 |
Q |
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| T |
33240266 |
tataaacta-tttatgtacaagactatgtgtatgttaacttgtgctc |
33240311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 306 - 447
Target Start/End: Original strand, 8291816 - 8291952
Alignment:
| Q |
306 |
tgcttttgtcataatatgcaattataaattttctataatgtaatatactatagtatattgagaatctatatgcaagttgcaacacacaataatgttataa |
405 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8291816 |
tgcttttgtcataatatgcaattataaatcttctata-tgtactatacta--gtatattgagaatctatt--caagttgcaacacacaataatgttataa |
8291910 |
T |
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| Q |
406 |
actattttatgtacaagactgtgtgtaagtttacttgtgctc |
447 |
Q |
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| T |
8291911 |
actattttatgtacaagactgagtgtagctttacttgtgctc |
8291952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 515 - 587
Target Start/End: Original strand, 33240389 - 33240461
Alignment:
| Q |
515 |
tcgaccttgtcttcatttgtctctagtctctattgtcgtaaattaatggatcatctgtcttcggttgtctctg |
587 |
Q |
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| T |
33240389 |
tcgaccttgtcttcatttgtctctagtctctattgtcgtaaattaatggatcatctgtcttcggttgtctctg |
33240461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 306 - 411
Target Start/End: Original strand, 33246290 - 33246383
Alignment:
| Q |
306 |
tgcttttgtcataatatgcaattataaattttctataatgtaatatactatagtatattgagaatctatatgcaagttgcaacacacaataatgttataa |
405 |
Q |
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||||||||| ||||||||||||||||||| |||||| |||||||||||||| |||||||||||| || ||||||||||||||||||||||| |
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| T |
33246290 |
tgcttttgtaataatatgcaattataaatcttctat-atgtaatatactat--tatattgagaattta---------tgcaacacacaataatgttataa |
33246377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 30084027 - 30083986
Alignment:
| Q |
259 |
cttcaactcaaacaaaacaactatttctccaaagctaccctt |
300 |
Q |
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| T |
30084027 |
cttcaactcaaataaaacaaccatttctccaaagctaccctt |
30083986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 30084077 - 30084042
Alignment:
| Q |
226 |
accaaattcacaagcttctctttcaccaacttgctt |
261 |
Q |
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| T |
30084077 |
accaaattcacaagcttctctctcaccaacttgctt |
30084042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 16940743 - 16940779
Alignment:
| Q |
261 |
tcaactcaaacaaaacaactatttctccaaagctacc |
297 |
Q |
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| T |
16940743 |
tcaactcaaacaaaacaaccatttctccaaagctacc |
16940779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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