View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_1 (Length: 819)
Name: NF11527_low_1
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 784; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 784; E-Value: 0
Query Start/End: Original strand, 19 - 806
Target Start/End: Original strand, 24642355 - 24643142
Alignment:
| Q |
19 |
gaagcatcaaaacatttggcattgctcggaagcttgccaggtgctctattggctgatgagttggtccatcctctccaagtccaattgaatcatgggtcat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24642355 |
gaagcatcaaaacatttggcattgctcggaagcttgccaggtgctctattggctgatgagttggtccatcctctccaagtccaattgaatcatgggtcat |
24642454 |
T |
|
| Q |
119 |
aacataaataactccggcttcacacaaagcagaaatccttatggcagctctcatgtagtcggtgaagacaaagaaagttgcacagtatggaatgaatccc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24642455 |
aacataaataactccggcttcacacaaagctgaaatccttatggcagctctcatgtagtcggtgaagacaaagaaagttgcacagtatggaatgaatccc |
24642554 |
T |
|
| Q |
219 |
gggctatgaagagcaataccattgcagattgctcccattgcgtgttccctaacaccaaaacgaacattgcgctcttctggagtagccttttggaaatctc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24642555 |
gggctatgaagagcaataccattgcagattgctcccattgcgtgttccctaacaccaaaacgaacattgcgctcttctggagtagccttttggaaatctc |
24642654 |
T |
|
| Q |
319 |
caaacgatttcaacaaagtcatgttggaagaggcaagatctgcactgccaccaataagaccaggaagaaccttggccagggcatttagattttgctgtga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24642655 |
caaacgatttcaacaaagtcatgttggaagaggcaagatctgcactgccaccaataagaccaggaagaaccttggccagggcatttagattttgctgtga |
24642754 |
T |
|
| Q |
419 |
cagatttcttgtagcatcagcaggggtttccggagtgtaagtctgaaagttgaagtcaaattggaattgtgatcaatattccacaaatggttgatagaac |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24642755 |
cagatttcttgtagcatcagcaggggtttccggagtgtaagtctgaaagttgaagtcaaattggaattgtgatcaatattccacaaatggttgatagaac |
24642854 |
T |
|
| Q |
519 |
tcaagttttgtttagtttaaaacttcgaaggcagtcaaaattcaaaagtaggattataaaggtgaggaacgtgctattcaatacaatttttaacacttgt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24642855 |
tcaagttttgtttagtttaaaacttcgaaggcagtcaaaattcaaaagtaggattataaaggtgaggaacgtgctattcaatacaatttttaacacttgt |
24642954 |
T |
|
| Q |
619 |
tgacatatgattcactataaacttgaactgagcatcaagcaactacagaagagatacctgaagacaaaatcaatagaaaccaagaagtacgacacattac |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24642955 |
tgacatatgattcactataaacttgaactgagcatcaagcaactacagaagagatacctgaagacaaaatcaatagaaaccaagaagtacgacacattac |
24643054 |
T |
|
| Q |
719 |
tcaccggaagtgctttctcccaatcagcaggtaattcacgattaataatagcctttagctctgcagcctcctctttgtatttcttctc |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24643055 |
tcaccggaagtgctttctcccaatcagcaggtaattcacgattaataatagcctttagctctgcagcctcctctttgtatttcttctc |
24643142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 784; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 784; E-Value: 0
Query Start/End: Original strand, 19 - 806
Target Start/End: Complemental strand, 52488414 - 52487627
Alignment:
| Q |
19 |
gaagcatcaaaacatttggcattgctcggaagcttgccaggtgctctattggctgatgagttggtccatcctctccaagtccaattgaatcatgggtcat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52488414 |
gaagcatcaaaacatttggcattgctcggaagcttgccaggtgctctattggctgatgagttggtccatcctctccaagtccaattgaatcatgggtcat |
52488315 |
T |
|
| Q |
119 |
aacataaataactccggcttcacacaaagcagaaatccttatggcagctctcatgtagtcggtgaagacaaagaaagttgcacagtatggaatgaatccc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52488314 |
aacataaataactccggcttcacacaaagctgaaatccttatggcagctctcatgtagtcggtgaagacaaagaaagttgcacagtatggaatgaatccc |
52488215 |
T |
|
| Q |
219 |
gggctatgaagagcaataccattgcagattgctcccattgcgtgttccctaacaccaaaacgaacattgcgctcttctggagtagccttttggaaatctc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52488214 |
gggctatgaagagcaataccattgcagattgctcccattgcgtgttccctaacaccaaaacgaacattgcgctcttctggagtagccttttggaaatctc |
52488115 |
T |
|
| Q |
319 |
caaacgatttcaacaaagtcatgttggaagaggcaagatctgcactgccaccaataagaccaggaagaaccttggccagggcatttagattttgctgtga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52488114 |
caaacgatttcaacaaagtcatgttggaagaggcaagatctgcactgccaccaataagaccaggaagaaccttggccagggcatttagattttgctgtga |
52488015 |
T |
|
| Q |
419 |
cagatttcttgtagcatcagcaggggtttccggagtgtaagtctgaaagttgaagtcaaattggaattgtgatcaatattccacaaatggttgatagaac |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52488014 |
cagatttcttgtagcatcagcaggggtttccggagtgtaagtctgaaagttgaagtcaaattggaattgtgatcaatattccacaaatggttgatagaac |
52487915 |
T |
|
| Q |
519 |
tcaagttttgtttagtttaaaacttcgaaggcagtcaaaattcaaaagtaggattataaaggtgaggaacgtgctattcaatacaatttttaacacttgt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52487914 |
tcaagttttgtttagtttaaaacttcgaaggcagtcaaaattcaaaagtaggattataaaggtgaggaacgtgctattcaatacaatttttaacacttgt |
52487815 |
T |
|
| Q |
619 |
tgacatatgattcactataaacttgaactgagcatcaagcaactacagaagagatacctgaagacaaaatcaatagaaaccaagaagtacgacacattac |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52487814 |
tgacatatgattcactataaacttgaactgagcatcaagcaactacagaagagatacctgaagacaaaatcaatagaaaccaagaagtacgacacattac |
52487715 |
T |
|
| Q |
719 |
tcaccggaagtgctttctcccaatcagcaggtaattcacgattaataatagcctttagctctgcagcctcctctttgtatttcttctc |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52487714 |
tcaccggaagtgctttctcccaatcagcaggtaattcacgattaataatagcctttagctctgcagcctcctctttgtatttcttctc |
52487627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 8e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 21 - 466
Target Start/End: Original strand, 8334910 - 8335355
Alignment:
| Q |
21 |
agcatcaaaacatttggcattgctcggaagcttgccaggtgctctattggctgatgagttggtccatcctctccaagtccaattgaatcatgggtcataa |
120 |
Q |
| |
|
|||||||| | |||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| || ||||| | |
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| T |
8334910 |
agcatcaagatatttggcattgcccggaagcttgccaggtgctctataggctgatgggttggtccatcctctccaagtcctattgaatcgtgagtcatga |
8335009 |
T |
|
| Q |
121 |
cataaataactccggcttcacacaaagcagaaatccttatggcagctctcatgtagtcggtgaagacaaagaaagttgcacagtatggaatgaatcccgg |
220 |
Q |
| |
|
|||| ||||| |||||||| | | || |||| ||| |||||| | | ||||||||||||||| ||||| || ||||||||||||||||| | ||| | |
|
|
| T |
8335010 |
catatataacaccggcttcggatagggcggaaagcctaatggcaccacgcatgtagtcggtgaaaacaaaaaaggttgcacagtatggaataagtccacg |
8335109 |
T |
|
| Q |
221 |
gctatgaagagcaataccattgcagattgctcccattgcgtgttccctaacaccaaaacgaacattgcgctcttctggagtagccttttggaaatctcca |
320 |
Q |
| |
|
||| |||||||| || || |||||||||||||||||| | ||||| ||||||||||| | ||| || |||||| |||||| | | |||||||||| ||| |
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|
| T |
8335110 |
gctgtgaagagcgatgccgttgcagattgctcccattccatgttctctaacaccaaatctaacgttacgctctgctggagaatcactttggaaatcacca |
8335209 |
T |
|
| Q |
321 |
aacgatttcaacaaagtcatgttggaagaggcaagatctgcactgccaccaataagaccaggaagaaccttggccagggcatttagattttgctgtgaca |
420 |
Q |
| |
|
||| ||||| ||| ||||| |||||||| ||||||||||||||||||||||| ||||| |||||||| || || |||||||| || |||||||| || | |
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|
| T |
8335210 |
aactttttcagcaaggtcatattggaagaagcaagatctgcactgccaccaatcagaccgggaagaacattcgcaagggcattaaggttttgctgcgata |
8335309 |
T |
|
| Q |
421 |
gatttcttgtagcatcagcaggggtttccggagtgtaagtctgaaa |
466 |
Q |
| |
|
| |||| || ||||| |||||| | || ||||||||||||||||| |
|
|
| T |
8335310 |
ggtttcgggtggcatcggcagggatctctggagtgtaagtctgaaa |
8335355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 715 - 803
Target Start/End: Original strand, 8335466 - 8335554
Alignment:
| Q |
715 |
ttactcaccggaagtgctttctcccaatcagcaggtaattcacgattaataatagcctttagctctgcagcctcctctttgtatttctt |
803 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| |||| | | || |||| || | ||||||||||||| ||||||||||| |
|
|
| T |
8335466 |
ttactcaccggaagtgctttctcccaaccagcaggtaaatcaccactgatgatagatttcaatactgcagcctcctccttgtatttctt |
8335554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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