View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_10 (Length: 512)
Name: NF11527_low_10
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 52092210 - 52092437
Alignment:
| Q |
18 |
aacagcacatagacaaagtataaacaaagatacacacacaacttgcaactatttttatcacatgaattctatctccacaaacaagatacttaatgggttt |
117 |
Q |
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| T |
52092210 |
aacagcacatagacaa-gtataaacaaagatacacacacaacctgcaactatttttatcacatgaattctatctccacaaacaagatacttaatgggttt |
52092308 |
T |
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| Q |
118 |
cctttacttctaatcaatcaataataatcaccaaaaccagaaagtgtgatattgttcttggagttggccttgtaaatgttagnnnnnnntcatcatcaac |
217 |
Q |
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| T |
52092309 |
cctttacttctaatcaatcaataataatcaccaaaaccagaaagtgtgatattgttcttggagttggccttgtaaatgttagaaaaaaatcatcatcaac |
52092408 |
T |
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| Q |
218 |
caaactacaattctttaatatatgtcatg |
246 |
Q |
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| T |
52092409 |
caaactacaattctttaatatatgtcatg |
52092437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 275 - 508
Target Start/End: Original strand, 52092466 - 52092698
Alignment:
| Q |
275 |
tgaagattgaaatgttgtgatggagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatggtttcaataaaggttt |
374 |
Q |
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| T |
52092466 |
tgaagattgaaatgttgtgatgaagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatgg-ttcaataaaggttt |
52092564 |
T |
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| Q |
375 |
ccacttgtcgtcactaggnnnnnnnntgagagggagccataatc----tttctcaatgatgaccttgaaaataccatcatcgtccagaaattaacatcaa |
470 |
Q |
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| T |
52092565 |
ccacttgtcgtcacta----caaaaatgagagggagccataatcttaatttctcaatgatgaccttgaaaataccatcatcgtccagaaattaacatcaa |
52092660 |
T |
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| Q |
471 |
cacacacctcacgacaacctcgtatattcatctctctc |
508 |
Q |
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| T |
52092661 |
cacacacctcacgacaacctcgtatatttatctctctc |
52092698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 277 - 477
Target Start/End: Original strand, 52082272 - 52082470
Alignment:
| Q |
277 |
aagattgaaatgttgtgatggagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatggtttcaataaaggtttcc |
376 |
Q |
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| T |
52082272 |
aagattgaaatgttgtgatgaagataacatttcaaataatagttttatcactttcagaatactagaaaacaaggcatccaagg-ttcaataaaggtttcc |
52082370 |
T |
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| Q |
377 |
acttgtcgtcactaggnnnnnnnntgagagggagccataatctttctcaatgatgaccttgaaaataccatcatcgtccagaaattaacatcaacacaca |
476 |
Q |
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| T |
52082371 |
acttgtcgtcactagg-acaaaaatgagagggagccataatttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacaca |
52082469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 199
Target Start/End: Original strand, 52082020 - 52082190
Alignment:
| Q |
51 |
acacacaacttgcaactatttttatcacatgaattctatctccacaaacaagatacttaatgg----------------------gtttcctttacttct |
128 |
Q |
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| T |
52082020 |
acacacagcttggaactatttttatcacatgaatgctatctccacaaacaagatacttaatggtcaaagatatatgtcatgatgagtttcctttacttct |
52082119 |
T |
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| Q |
129 |
aatcaatcaataataatcaccaaaaccagaaagtgtgatattgttcttggagttggccttgtaaatgttag |
199 |
Q |
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| T |
52082120 |
aatcaatcaataataatcaccatacccagaatgtgcgatattgttcttggagattaccttgtaaatgttag |
52082190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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