View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_12 (Length: 440)
Name: NF11527_low_12
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 11470665 - 11470407
Alignment:
| Q |
11 |
caaaggagttatccattccagcatctgttaatgaaagaaaaacaggtttaatttctggtaaggatatgagagaagagatcaacagaaaaaggaaggatga |
110 |
Q |
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| T |
11470665 |
caaaggagttatccattccagcatctgttaatgaaagaaaaacaggtttaatttctggtaaggatatgagagaagagatcgacagaaaaaggaaggatga |
11470566 |
T |
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| Q |
111 |
tttgttgaggtaattgttcaattatatgatt-ttttccaagcacatattcttatgtattagatgaattctcgttaatattcatgcttaatgccataatgt |
209 |
Q |
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| T |
11470565 |
tttgttgaggtaattgttcaattatatgatttttttccaagcacatattcttatgttttagatgaattctcgttaatattcatgcttaatgccataatgt |
11470466 |
T |
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| Q |
210 |
tgtgattctgtttcgtttacttgtttagttccgatgcatgcatgttttttgtggcaatg |
268 |
Q |
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| T |
11470465 |
tgtgattctattttgtttacttgtttagttccgatgcaagcatgttttttgtggcaatg |
11470407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 18398127 - 18398385
Alignment:
| Q |
11 |
caaaggagttatccattccagcatctgttaatgaaagaaaaacaggtttaatttctggtaaggatatgagagaagagatcaacagaaaaaggaaggatga |
110 |
Q |
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| T |
18398127 |
caaaggagttatccattcctgcatctataaatgaaaggaaaataggtttaatttctggtaaggatatgagagaagagatcgacagaaaaaggaaggatga |
18398226 |
T |
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| Q |
111 |
tttgttgaggtaattgttcaattatatgatttt-ttccaagcacatattcttatgtattagatgaattctcgttaatattcatgcttaatgccataatgt |
209 |
Q |
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| T |
18398227 |
tttgttgaggtaattgttcaattatatgatttttttccaagcacatattcttatgttttagatgaattctcgttaatattcatgcttaatgccataatgt |
18398326 |
T |
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| Q |
210 |
tgtgattctgtttcgtttacttgtttagttccgatgcatgcatgttttttgtggcaatg |
268 |
Q |
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| T |
18398327 |
tgtgattctgttttgtttacttgtttagttccgatgcatgcatgttttttgtggcaatg |
18398385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 281 - 425
Target Start/End: Original strand, 18398460 - 18398604
Alignment:
| Q |
281 |
aaaggctgttaactgtttgttgattatggttacgcttaaataagaatttttctggtgtgaaatgtgaatgacttgagagtaatccttgctaagtcttgtg |
380 |
Q |
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| T |
18398460 |
aaaggctgttaactgtttgttgattatggttacgcttaaataagaatttttctggtgtgaaatgtgaatgatttgagagtaatccttgctaagtcttgtg |
18398559 |
T |
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| Q |
381 |
ggttatcagtttataaatacaatctgcagcataaacaatttaatt |
425 |
Q |
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| T |
18398560 |
ggttatcagtttataaatacaatctgcagcataaacaatttaatt |
18398604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 281 - 425
Target Start/End: Complemental strand, 11470332 - 11470187
Alignment:
| Q |
281 |
aaaggctgttaactgtttgttgattatggttacgcttaaataagaatttttctggtgtgaaa-tgtgaatgacttgagagtaatccttgctaagtcttgt |
379 |
Q |
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| T |
11470332 |
aaaggctgttaactgtttgttgattatggttacgcttaaataagaatttttctggtgtgaaactgtgaatgacttgagagtaatccttgctaagtcttgt |
11470233 |
T |
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| Q |
380 |
gggttatcagtttataaatacaatctgcagcataaacaatttaatt |
425 |
Q |
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| T |
11470232 |
gggttatcagtttataaatacaatctgcagcataaacaatttaatt |
11470187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 31851078 - 31850986
Alignment:
| Q |
24 |
cattccagcatctgttaatgaaagaaaaacaggtttaatttctggtaaggatatgagagaagagatcaacagaaaaaggaaggatgatttgtt |
116 |
Q |
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| T |
31851078 |
cattccagcatctgttaatgaaagaaaaagtggtttgatttctgttaaggaactcagagacaagattgacagaaagaagaaggatgatatgtt |
31850986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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