View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_14 (Length: 384)
Name: NF11527_low_14
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 915644 - 915809
Alignment:
| Q |
1 |
ccatgtgaatcatttgtagagggtactgttgt-aagataaca----------agtagaagataacccaaaattagaagtgtttgtgtgttgaatgactaa |
89 |
Q |
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| T |
915644 |
ccatgtgaatcatttggagagggtactgttgttaagataacatggaaaacaaagtagaagataacccaaaatcagaagtgtttgtgtgttgaatgactaa |
915743 |
T |
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| Q |
90 |
gttttgagagagaatggttattgatcattttcatgcagaataaaattgggattcacttctgttgcc |
155 |
Q |
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| T |
915744 |
gttttgagagagaatggttattgatcattttcatgcagaatataattgggattcacttctgttgcc |
915809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 289 - 367
Target Start/End: Original strand, 915934 - 916012
Alignment:
| Q |
289 |
ggtaattaaacatttatttcaaccataccaaaaacggagtgatggtgtgtcctattccaacctttccaatctcctctgt |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
915934 |
ggtaattaaacatttatttcaaccataccaaaaacggagtgatggtgtgtcctattccaacctttccaatctcctctgt |
916012 |
T |
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