View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_17 (Length: 374)
Name: NF11527_low_17
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 27 - 364
Target Start/End: Original strand, 52423048 - 52423385
Alignment:
| Q |
27 |
gaatttaatcaccaacctcttaggtctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatactgggtaggtctgagtagagcaact |
126 |
Q |
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| T |
52423048 |
gaatttaatcaccaacctcttaggtctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatactgggtaggtctgagtagagcaact |
52423147 |
T |
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| Q |
127 |
tcttccaattctttgaatagaagatgacaacataatcattgatcagttaaattattataaaattgatagagattagcatctattccagttccttagatta |
226 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52423148 |
tcttccaattctgtgaatagaagatgacaacataatcattgatcatttaaattattataaaattgatagagattagcatctattccagttccttagatta |
52423247 |
T |
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| Q |
227 |
caagtttccaagtcagtgnnnnnnncctaaatctccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggaga |
326 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52423248 |
caagtttccaagtcagtgaaaaaaacctaaatctccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggaga |
52423347 |
T |
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| Q |
327 |
ttgtttctatctcttatttcgaaggggattcgtctctg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
52423348 |
ttgtttctatctcttatttcgaaggggattcgtctctg |
52423385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 28 - 240
Target Start/End: Original strand, 42715951 - 42716166
Alignment:
| Q |
28 |
aatttaatcaccaacctcttaggtctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatact-gggtaggtctgagtagagcaact |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |
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| T |
42715951 |
aatttaatcaccaacctcttaggtctaataaccaatctattcaaaagcaagtttgtttcaagttctctatcatactggggtaggtctgagtagagaaact |
42716050 |
T |
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| Q |
127 |
tcttcca-attctttgaatagaagatgacaacataatcattgatcagttaaattattataaaattgatagagattagcatctat-tccagttccttagat |
224 |
Q |
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|||| || || |||| ||||||||||| | |||||||||||||| ||| | |||||| ||||||| || ||||||||||||| |||| |||||||||| |
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| T |
42716051 |
tcttacagtttttttgtatagaagatgaaagcataatcattgatctgttcatttattaaaaaattgctactgattagcatctatctccaattccttagat |
42716150 |
T |
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| Q |
225 |
tacaagtttccaagtc |
240 |
Q |
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|||||||||||||||| |
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| T |
42716151 |
tacaagtttccaagtc |
42716166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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