View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_18 (Length: 357)
Name: NF11527_low_18
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 31 - 341
Target Start/End: Original strand, 6950319 - 6950629
Alignment:
| Q |
31 |
agaggaggcgcatgaaaaaagatggagtccaattaatatagtnnnnnnnngacaagtacccacttgtgtgataagtgaagagaggacgccgaaccatgca |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6950319 |
agaggaggcgcatgaaaaaagatggagtccaattaatatagtaaaaaaaagacaagtacccacttgtgtgataagtgaagagaggacgccgaaccatgca |
6950418 |
T |
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| Q |
131 |
agcaagcaacaacataacacaaaacaacacaattggtcagactgcaacactgcaatattgagtagtacaacacaccaaaccaaacctgccaatactgcct |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6950419 |
agcaagcaacaacataacacaaaacaacacaattggtcagactgcaacactgcaatattgagtagtacaacacaccaaaccaaacctgccaatactgcct |
6950518 |
T |
|
| Q |
231 |
tttaccttgccctacctctagtaaaaataccccacataccctcttttggtccacatcctttctttaaccatggttactattaccatcacttttccacttt |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6950519 |
tttaccttgccctacctctagtaaaaataccccacatacccttttttggtccacatcctttctttaaccatggttactattaccatcacttttccacttt |
6950618 |
T |
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| Q |
331 |
cttactatctt |
341 |
Q |
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||||||||||| |
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| T |
6950619 |
cttactatctt |
6950629 |
T |
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