View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_20 (Length: 346)
Name: NF11527_low_20
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 150 - 330
Target Start/End: Original strand, 16840975 - 16841155
Alignment:
| Q |
150 |
gcattgccatttcatcgttctgaatgaacgagaaacaataaaaaagaagagaaatattcacctaggtttagctagagcttgtgagttgaattaaaacgct |
249 |
Q |
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| T |
16840975 |
gcattgccatttcaacgttctgaatgaacgagaaacaataaaaaagaagagaaatattcacctaggtttagctagagattgtgagttgaattaaaacgct |
16841074 |
T |
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| Q |
250 |
gtgttttacgtttatatttatttgaatttcagcgtagaatgagctaacagttaattgtaggaatagccaaaacccataaac |
330 |
Q |
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| T |
16841075 |
gcgttttacgtttatatttatttgaatttcagcgtagaatgagctaacagttaagtgtaggaatagccaaaacccataaac |
16841155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 16840864 - 16840974
Alignment:
| Q |
1 |
attaaatgtaatcacat-gtgtcaaatacgtgtcagacacataacacgccggtgttggttctacggagcaaattcaaaaagaataccacattataacatc |
99 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
16840864 |
attaaatgtaatcacattgtgtcaaatacgtgtcagacacataacacgcccgtgttggttctacggggcaaattcaaaaagaatatcacattataacatc |
16840963 |
T |
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| Q |
100 |
aacaaatgcag |
110 |
Q |
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| T |
16840964 |
aacaaatgcag |
16840974 |
T |
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