View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_21 (Length: 339)
Name: NF11527_low_21
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 43647205 - 43647494
Alignment:
| Q |
15 |
gtttgggtgtaaagcttttaatccttctttgcctttgccatcgccgccgggagtttcaccttcctctcctccatcgtcgggagggtcaccaacctctcca |
114 |
Q |
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| T |
43647205 |
gtttgggtgtaaagcttttaatccttctttgcctttgccatcgccgccgggagtttcaccttcctctcctccatcgccgggaggttcaccaacctctcca |
43647304 |
T |
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| Q |
115 |
tcaccgccggggacgacacctattactccatcgccgccagcagtgtcacctagcactccatcaccgccagggacgacacctatctctccaacaccgccgg |
214 |
Q |
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| T |
43647305 |
tcaccgccggggacgacgcctattactccatcgccgccagcagtgtcacctagcactccgtcaccgccagggacgacacctatctctccaacaccgccgg |
43647404 |
T |
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| Q |
215 |
gaacgacacctgtatccccacaaccaccagcagtttcacctacctctccatcaccgccgggaacaacacctatatctccagaaccaccgg |
304 |
Q |
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| T |
43647405 |
gaacaacacctacatctccagaaccaccggcattgccacctagcactccttcacctccgggaacgacacctatctctccatcaccaccgg |
43647494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 43647381 - 43647457
Alignment:
| Q |
251 |
cacctacctctccatcaccgccgggaacaacacctatatctccagaaccaccggcattgccacctagcactccttca |
327 |
Q |
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| T |
43647381 |
cacctatctctccaacaccgccgggaacaacacctacatctccagaaccaccggcattgccacctagcactccttca |
43647457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 108 - 225
Target Start/End: Original strand, 43647388 - 43647505
Alignment:
| Q |
108 |
ctctccatcaccgccggggacgacacctattactccatcgccgccagcagtgtcacctagcactccatcaccgccagggacgacacctatctctccaaca |
207 |
Q |
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| T |
43647388 |
ctctccaacaccgccgggaacaacacctacatctccagaaccaccggcattgccacctagcactccttcacctccgggaacgacacctatctctccatca |
43647487 |
T |
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| Q |
208 |
ccgccgggaacgacacct |
225 |
Q |
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|| ||||||||||||||| |
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| T |
43647488 |
ccaccgggaacgacacct |
43647505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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