View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_23 (Length: 314)
Name: NF11527_low_23
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 33718975 - 33719272
Alignment:
| Q |
1 |
cagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggctcggaacctttaccacggcggaggaagctgccagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718975 |
cagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgctgttcgtgtttggctcggaacctttaccacggcggaggaagctgccagag |
33719074 |
T |
|
| Q |
101 |
cttatgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttccacttgttgatgaatcccttaagcatgttgaggaaccagaagtgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33719075 |
cttatgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttccacttgttgatgaatcccttaagcatgttgaggaaccagaagtgat |
33719174 |
T |
|
| Q |
201 |
cgttcattctaagcatgtaacaaaggatgagaatatgaatcaagaaatgcaaattgaaacaatgacggggtttgagaataataaggattgtgattttt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33719175 |
cgttcattctaagcatgtaacaaaggatgagaatatgaatcaagaaatgcaaattgaaacaatgacggggtttgagaataataaggattgtgattttt |
33719272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 33720994 - 33721171
Alignment:
| Q |
1 |
cagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggctcggaacctttaccacggcggaggaagctgccagag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
33720994 |
cagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacggcggaggaagctgctagag |
33721093 |
T |
|
| Q |
101 |
cttatgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttccacttgttgatgaatcccttaagc |
178 |
Q |
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|||| ||||||||||| |||||||| || |||||||| || ||||| ||||||||||||||||||||||| ||||||| |
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| T |
33721094 |
cttacgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttccacttgttgatgaatctcttaagc |
33721171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 33735648 - 33735943
Alignment:
| Q |
1 |
cagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggctcggaacctttaccacggcggaggaagctgccagag |
100 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33735648 |
cagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggaggaagctgccagag |
33735747 |
T |
|
| Q |
101 |
cttatgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttccacttgttgatgaatcccttaagcatgttgaggaaccagaagtgct |
200 |
Q |
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|||| |||||||| || || ||||| |||||||| ||||| ||||||||||||||| | ||||||||||| |||||| | || | ||| ||||||||| | |
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| T |
33735748 |
cttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaagaacgtggtggatccagaagtggt |
33735847 |
T |
|
| Q |
201 |
cgttcattctaagcatgtaacaaaggatgagaatatgaatcaagaaatgcaaattgaaacaatgacggggtttgagaataataaggattgtgatttttg |
299 |
Q |
| |
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|| | || || || | |||||| |||||||||||||||||||| |||||||| |||| | ||| ||||||| ||||||| ||||||||||||| |
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| T |
33735848 |
tgtccctttggaggat---ataaaggacgagaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaattgtgatttttg |
33735943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 179
Target Start/End: Original strand, 33750451 - 33750626
Alignment:
| Q |
4 |
agaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggctcggaacctttaccacggcggaggaagctgccagagctt |
103 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
33750451 |
agaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcggaggaagctgccagagctt |
33750550 |
T |
|
| Q |
104 |
atgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttccacttgttgatgaatcccttaagca |
179 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||| || |||||||||||| | |||||||| || |||||||| |
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| T |
33750551 |
atgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaagca |
33750626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 33750685 - 33750755
Alignment:
| Q |
229 |
gagaatatgaatcaagaaatgcaaattgaaacaatgacggggtttgagaataataaggattgtgatttttg |
299 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| | || |||| |||||||| ||||||||||||||| |
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| T |
33750685 |
gagaatatgaatcaagaaatgcaaagtgagacaaatattggatttgggaataatatggattgtgatttttg |
33750755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 45437332 - 45437426
Alignment:
| Q |
7 |
ccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggctcggaacctttaccacggcggaggaagctgccagagc |
101 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| | |||||||||||||||||||| || | ||| || || |||||||| ||||| |
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| T |
45437332 |
ccatggggaaaatgggcagctgagatccgtgacccgagaaaaggagttcgtgtttggctcggaactttcaacactgctgaagaagctgcaagagc |
45437426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 39360347 - 39360450
Alignment:
| Q |
7 |
ccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggctcggaacctttaccacggcggaggaagctgccagagcttatg |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || ||| | |||||||||||||| || || || | ||| || || |||||||| |||||||| | |
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| T |
39360347 |
ccatggggaaaatgggctgcagagattcgtgatccaagaaaaggagttcgtgtttggcttggtacattcaacactgctgaagaagctgctagagcttacg |
39360446 |
T |
|
| Q |
107 |
acaa |
110 |
Q |
| |
|
|||| |
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|
| T |
39360447 |
acaa |
39360450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 50102306 - 50102277
Alignment:
| Q |
7 |
ccatggggaaaatgggctgctgagattcgt |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
50102306 |
ccatggggaaaatgggctgctgagattcgt |
50102277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6568903 - 6568943
Alignment:
| Q |
1 |
cagagaccatggggaaaatgggctgctgagattcgtgaccc |
41 |
Q |
| |
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||||||||||||||||||||||| ||||| || |||||||| |
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| T |
6568903 |
cagagaccatggggaaaatgggcagctgaaatacgtgaccc |
6568943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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