View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_27 (Length: 293)
Name: NF11527_low_27
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 30723821 - 30724093
Alignment:
| Q |
17 |
acagatgatgtcactttagaactaaatgctcctctacttgaaagtgttttaataaatcaacaatttagatcggtaaatcgtgagacacgtagctgcaaaa |
116 |
Q |
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| T |
30723821 |
acagatgatgtcactttagaactaaatgctcctctacttgaaagtgttttaataaatcaacaatttagatcggtaaatcgtgagacacgtagctgcaaaa |
30723920 |
T |
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| Q |
117 |
tcaagttttctgcttcgtgtatgaaagaattcacttatcgtggctgtgggatgtcacaagctattattctgtcagatccatcagcagctcgtaatgcttc |
216 |
Q |
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| T |
30723921 |
tcaagttttctgcttcgtgtatgaaagaattcacttatcgtggctatgggatgtcacaagctattattctgtcagatccatcagcagctcgtaatgcttc |
30724020 |
T |
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| Q |
217 |
tgctaaaatcactttggataaggaatatggtaatagtgttcaagagactcaatcttgtgcttctctgcttctc |
289 |
Q |
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| T |
30724021 |
tgctaaaatcactttggataaggaatatggtaatagtgttcaagagactcaatcttgtgcttctctacttctc |
30724093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 30716131 - 30716328
Alignment:
| Q |
25 |
tgtcactttagaactaaatgctcctctacttgaaagtgttttaataaatcaacaatttagatcggtaaatcgtgagacacgtagctgcaaaatcaagttt |
124 |
Q |
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| T |
30716131 |
tgtcactttagaactaaaggcacctctacttgaaagtgtttttatagatcaagatcttgagtcggttactcgtgagccacgtaactgcaaaatcaaattt |
30716230 |
T |
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| Q |
125 |
tctgcttcgtgtatgaaagaattcacttatcgtggctgtgggatgtcacaagctattattctgtcagatccatcagcagctcgtaatgcttctgctaa |
222 |
Q |
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| T |
30716231 |
tctgattcaagcctgaaagaattcacttattgtggcgatggtatatcacaagctattgttctgtcagatccatcttcagctcgcaatgttgctgctaa |
30716328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 11359695 - 11359639
Alignment:
| Q |
103 |
acgtagctgcaaaatcaagttttctgcttcgtgtatgaaagaattcacttatcgtgg |
159 |
Q |
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| T |
11359695 |
acgtagctgcaaaatcaaattttctgcttcatgtttgaaagaattcacttattgtgg |
11359639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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