View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_3 (Length: 799)
Name: NF11527_low_3
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 17 - 787
Target Start/End: Complemental strand, 20898968 - 20898210
Alignment:
| Q |
17 |
gtttccggatggacaatgagcaccaagtcgaagaacaagctctccagtacttaatcgagcatataataagcgacttgcagaagtaacatcacaactgttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
20898968 |
gtttccggatggacaatgagcaccaagtcgaagaacaagctctccagtacttaatcgagcatataataagcgacttgcagaagtaccatcacaacagttt |
20898869 |
T |
|
| Q |
117 |
gttgattccggtgtattatttgaatttgcttccatcaacatagagtccagggattcacttgcaatgatatggcgccttttccgagagatgcagcaattaa |
216 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20898868 |
gttgattccggtgtattgtttgaatttgcttccatcaacatatagtccagggattcacttgcaatgatatggcgccttttccgagagatgcagcagttaa |
20898769 |
T |
|
| Q |
217 |
ttactttaaattgttgattgagaagacatgacttcagatctggaatgtcatcaagggggactccaggtaaatgcttttcttcggaccaaagttttcttat |
316 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20898768 |
ttacttgaaattgttgattgagaagacatgacttcagatctggaatgtcatcaagggggactccaggtaaatgcttttcttcggaccaaagttttcttat |
20898669 |
T |
|
| Q |
317 |
ctgcaaaagtaaaaaataatcataaacaaccaaattatcaatttaacagttaattatcaaaacatgaaatttcatattgagctaaacatacttcagcaac |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20898668 |
ctgcaaaagtaaaaaataatcataaacaaccaaattatcaatttaacagttaattatcaaaacatgaaatttcatattgagctaaacatacttcagcaat |
20898569 |
T |
|
| Q |
417 |
aaccctgcaccaaaaaatttccatttctcgaagggtcttcaagtttccgattacttcagctagtttaacaacaaggctttcaggaggagcaccatgaata |
516 |
Q |
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| T |
20898568 |
aaccctgcaccaaaaaatttccatttctcgaagggtcttcaagtttccgattacttcagctagtttaacaacaaggctttcaggaggagcaccatgaata |
20898469 |
T |
|
| Q |
517 |
tctcttattaaagatggtatctcaatctcctcttgattggagttgatcttccttctaaggaaatacccctctgcaaatatcaccgtagaaccaaaacacc |
616 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20898468 |
tctcttattaaagatggtatctcaatctcctcttgattggagttgatcttccttctaaggaaatacccctctgcaaatatc----------------acc |
20898385 |
T |
|
| Q |
617 |
gaaaaatgtatgagcataaaatggttcattgatgcaattatattgtaa----gcaagccgctcaaaatttgcatacctggattgaaaagagaactaatca |
712 |
Q |
| |
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| T |
20898384 |
gaaaaatgtatgagcataaaatggttcattgatgcaattatatcgtaagcatgcaagccgctcaaaatttgcatacctggattgaaaagagaactaatca |
20898285 |
T |
|
| Q |
713 |
aatacacaaatttctcattgctggtgaattcagaggtaagtttgtcccccttctcacgtagcactaatgccttca |
787 |
Q |
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| T |
20898284 |
aatacacaaatttctctttgctggtgaattcagaggtaagtttgtcctccttctcacgtagcactaatgccttca |
20898210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 399 - 597
Target Start/End: Complemental strand, 40699191 - 40698993
Alignment:
| Q |
399 |
taaacatacttcagcaacaaccctgcaccaaaaaatttccatttctcgaagggtcttcaagtttccgattacttcagctagtttaacaacaaggctttca |
498 |
Q |
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|||||||||||| |||||||||||||||| || | |||||| ||| | |||||| ||||||| | | |||||| | || |||||||| |||||| |
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| T |
40699191 |
taaacatacttcttcaacaaccctgcaccagaacagagccatttttcgtacggtcttgtagtttccaacaatttcagccaacttcacaacaagactttca |
40699092 |
T |
|
| Q |
499 |
ggaggagcaccatgaatatctcttattaaagatggtatctcaatctcctcttgattggagttgatcttccttctaaggaaatacccctctgcaaatatc |
597 |
Q |
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| T |
40699091 |
ggaggagcaccgtgaatatctcttggcaaagatgtcatatcatttccctctgggttggaattgatcttccttctaaggaaatctccctctgcgaatatc |
40698993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 135 - 313
Target Start/End: Complemental strand, 40700203 - 40700025
Alignment:
| Q |
135 |
tttgaatttgcttccatcaacatagagtccagggattcacttgcaatgatatggcgccttttccgagagatgcagcaattaattactttaaattgttgat |
234 |
Q |
| |
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|||||| | |||| ||||| |||||| || || |||||| | ||||||||| || |||| || ||||| || || ||||||||||||| ||| ||||||| |
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| T |
40700203 |
tttgaactagcttgcatcatcatagactctagagattcagtcgcaatgatacggagcctctttcgagaaatacaacaattaattacttgaaagtgttgat |
40700104 |
T |
|
| Q |
235 |
tgagaagacatgacttcagatctggaatgtcatcaagggggactccaggtaaatgcttttcttcggaccaaagttttct |
313 |
Q |
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|||||||||| |||||||||||||| |||| | |||||||| ||||||| | |||||| ||||||| |||||| |
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| T |
40700103 |
acagaagacatgttttcagatctggaatatcattctgcgggactcctggtaaatattgttcttcagaccaaaattttct |
40700025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 785
Target Start/End: Complemental strand, 40698874 - 40698773
Alignment:
| Q |
684 |
catacctggattgaaaagagaactaatcaaatacacaaatttctcattgctggtgaattcagaggtaagtttgtcccccttctcacgtagcactaatgcc |
783 |
Q |
| |
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||||||||||| ||||||||| | ||||||| ||||| |||||||||||| | || |||||||||||||| ||| ||||||| || | |||||| ||| |
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| T |
40698874 |
catacctggatcaaaaagagaattgatcaaatgcacaactttctcattgctactaaactcagaggtaagtttatcctccttctctcgcaacactaaagcc |
40698775 |
T |
|
| Q |
784 |
tt |
785 |
Q |
| |
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|| |
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|
| T |
40698774 |
tt |
40698773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 40718454 - 40718351
Alignment:
| Q |
210 |
caattaattactttaaattgttgattgagaagacatgacttcagatctggaatgtcatcaagggggactccaggtaaatgcttttcttcggaccaaagtt |
309 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||| |||| ||||||||| |||| | | ||| ||||||||||| | |||||| ||||||| || |
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| T |
40718454 |
caattaattacttgaaattgttgatacagaagacatgttttcaaatctggaatatcattatgcaggaatccaggtaaatattattcttcagaccaaaatt |
40718355 |
T |
|
| Q |
310 |
ttct |
313 |
Q |
| |
|
|||| |
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|
| T |
40718354 |
ttct |
40718351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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