View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_30 (Length: 254)
Name: NF11527_low_30
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_30 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 43142425 - 43142667
Alignment:
| Q |
12 |
aagcacagaggatccggcttaccatcctatatcacgactaatatcagaatttgaggtataataaagtccatatttcctcccatttctgcattcatgtttt |
111 |
Q |
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| T |
43142425 |
aagcacagaggatccggcttaccatcctatatcacgactaatatcagaatttgaggtataataaagtccatatttcctcccatttctgcattcatgtttt |
43142524 |
T |
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| Q |
112 |
taatcatttgctattaagctttgcaaccttaaactcattttaagtttggttttttataccccgttaccgtgatggaaccagcaaaacttctgtgtcaaag |
211 |
Q |
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| T |
43142525 |
taatcatttgctattaagctttgcaaccttaaactcattttaagtttggttttttataccccgttaccgtgatggaaccagcaaaacttctgtgtcaaag |
43142624 |
T |
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| Q |
212 |
tctgttcagttccttctgagccctttcatgaatttcttccttt |
254 |
Q |
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| T |
43142625 |
tctgttcagttccttctgagccctttcatgaatttcttccttt |
43142667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 43154403 - 43154510
Alignment:
| Q |
12 |
aagcacagaggatccggcttaccatcctatatcacgactaatatcagaatttgaggtataataaagtccatatttcctcccatttctgcattcatgtttt |
111 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| | ||||||||| ||||| ||| |
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| T |
43154403 |
aagcacagaggatcctgcttaccatgctatatcacgactaatatcagaatttgaggtataaataagtccacattttcccccatttctaaattcacttttc |
43154502 |
T |
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| Q |
112 |
taatcatt |
119 |
Q |
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| T |
43154503 |
taatcatt |
43154510 |
T |
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