View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_39 (Length: 230)
Name: NF11527_low_39
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_39 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 15422357 - 15422134
Alignment:
| Q |
7 |
aaaccttctattactgagcaaccatcaaatatagatgctcaaagtcctcaatgaagtcatcttccctatattgggaggtaaacttgataagctgaggcag |
106 |
Q |
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| T |
15422357 |
aaaccttctattactgagcaatcatcaaatatagatgctcaaagtcctcaatgaagtcatcttccctatattgggaggtaaacttgataagctgaggcag |
15422258 |
T |
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| Q |
107 |
ccaaacaaatatagatgttgtagagctttcatgtgtatcaaattattaggcaattgttggaggctccagcagtcattcaacgatagatgttgtagagctt |
206 |
Q |
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| T |
15422257 |
ccaaacaaatatagatgttgtagagctttcaagtgtatcaaattattaggcaattgttggaggctccagcagtcattcaacgatagatgttgtagagctt |
15422158 |
T |
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| Q |
207 |
tcaagcgtatcaaattattaggca |
230 |
Q |
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| T |
15422157 |
tcaagcgtatcaaattattaggca |
15422134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 15082524 - 15082643
Alignment:
| Q |
41 |
atgctcaaagtcctcaatgaagtcatcttccctatattgggaggtaaacttgataagctgaggcagccaaacaaatatagatgttgtagagctttcatgt |
140 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |
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| T |
15082524 |
atgctcaaagtcctcagggaagtcaagttccctatattgggaggtaaacttgataatctgaagcagccaaacaaatatagatgttgtagagctttcaagt |
15082623 |
T |
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| Q |
141 |
gtatcaaattattaggcaat |
160 |
Q |
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| T |
15082624 |
gtatcaaattattaggcaat |
15082643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 15430051 - 15430007
Alignment:
| Q |
117 |
atagatgttgtagagctttcatgtgtatcaaattattaggcaatt |
161 |
Q |
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| T |
15430051 |
atagatgttgtagagctttcaagtgtatcaaattattaggcaatt |
15430007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 15430052 - 15430010
Alignment:
| Q |
188 |
gatagatgttgtagagctttcaagcgtatcaaattattaggca |
230 |
Q |
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| T |
15430052 |
gatagatgttgtagagctttcaagtgtatcaaattattaggca |
15430010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 15082600 - 15082641
Alignment:
| Q |
189 |
atagatgttgtagagctttcaagcgtatcaaattattaggca |
230 |
Q |
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| T |
15082600 |
atagatgttgtagagctttcaagtgtatcaaattattaggca |
15082641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 15422175 - 15422124
Alignment:
| Q |
117 |
atagatgttgtagagctttcatgtgtatcaaattattaggcaattgttggag |
168 |
Q |
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| T |
15422175 |
atagatgttgtagagctttcaagcgtatcaaattattaggcaaattttggag |
15422124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 159
Target Start/End: Original strand, 15320439 - 15320560
Alignment:
| Q |
35 |
atatagatgctcaaagtcctcaatgaagtcatcttccctatattgggaggtaaacttgataagctgaggcagccaaacaaatatagatgttgtagagctt |
134 |
Q |
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||||| ||||||||||||||||| ||||||| ||||||||| | | | || |||||||||| | |||||||| |||| ||| |||||||| || || |
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| T |
15320439 |
atatacatgctcaaagtcctcaaggaagtcaacttccctatttggcgcggcaaacttgata---tatagcagccaatcaaagatatatgttgtaaagatt |
15320535 |
T |
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| Q |
135 |
tcatgtgtatcaaattattaggcaa |
159 |
Q |
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||| ||| ||||| |||||||||| |
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| T |
15320536 |
tcaattgtgtcaaactattaggcaa |
15320560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 15346647 - 15346703
Alignment:
| Q |
112 |
caaatatagatgttgtagagctttcatgtgtatcaaattattaggcaattgttggag |
168 |
Q |
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|||||||||| ||||||||||||||| ||||| || | |||||||||| | |||||| |
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| T |
15346647 |
caaatatagacgttgtagagctttcaagtgtaccagactattaggcaacttttggag |
15346703 |
T |
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