View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_4 (Length: 664)
Name: NF11527_low_4
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_4 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 45728941 - 45728460
Alignment:
| Q |
1 |
gtttcttaggataattatactaatatgataatgaagtttcatctgaaagtttaaacaatttgtaataaggaatacagttaatgcaatcaaatata--aga |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
45728941 |
gtttcttaggataattatactaatatgataatgaagtttcatctgaaattttaaacaatttgtaataaggaatacagttgatgcaatcaaatatataaga |
45728842 |
T |
|
| Q |
99 |
atccgaaatttcaaatatgcttgcttccttttcgcattgtaaccaaaaagaaaata-tgcttgcttcgactttgatcagtagaaataattggagttccgt |
197 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45728841 |
atctgaaatttcaaatatgcttgcttcctttttgcattgtaaccaaaaaaaaaaaaatgcttgcttcgactttgatcagtagaaataattggagttccgt |
45728742 |
T |
|
| Q |
198 |
gtggataatgtgggtggattcccatattga-tggttgaaggaaatggccgtctgttatccagtcgtttagtgaagctcaaggctcaagcaagcaacatcg |
296 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45728741 |
gtggataatgtgggtggattcccatattgaatggttgaaggaaatggccgtctgttatccagtcgtttagtgaagctcaaggctcaagcaagcaacatcg |
45728642 |
T |
|
| Q |
297 |
gctgacccacaagacgacccacgttcaacattctcattcttattcttttttgaatgtgatggtgaagatctcttccggcttaaatactagag-ttcttaa |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
45728641 |
gctgacccacaagacgacccacgttcaacattctcattcttattcttttttgaatgtgatggtgaagatctcttccggcttaaatactggagattcttaa |
45728542 |
T |
|
| Q |
396 |
tttgaattcactcataagtatcaagtatgtgtatgtagcaggtaagggagagttttgttgcatagtgccgtcttacttgattc |
478 |
Q |
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| T |
45728541 |
tttgaattcactcataagcat-aagtatgtgtatgtagcaggtaagggagagttttgttgcatagtgccatcttacttgattc |
45728460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 467 - 651
Target Start/End: Complemental strand, 45728060 - 45727876
Alignment:
| Q |
467 |
cttacttgattctcatgttgggctcttaaccgcccaacacaaattaaaaaataaatattgcgcaatatatttttctatttccgtgttttaattgtttctc |
566 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45728060 |
cttacttgattctcatgttgggctcttaaccgcccaacacaaattaaaaaataaatattgcgcaatatatttttctatttccgtgttttaattgtttctc |
45727961 |
T |
|
| Q |
567 |
gcagtctcgatactcgctcaaactaccttcttcttcttagttctcttccaactcacttgagcctaacccttctacgttctcttct |
651 |
Q |
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| T |
45727960 |
gcactctcgatactcgctcaaactaccttcttcttcatagttctcttccaactcacttgagcctaacccttctacgttctcttct |
45727876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 218 - 347
Target Start/End: Complemental strand, 45735028 - 45734894
Alignment:
| Q |
218 |
cccatattga-tggttgaaggaaatggccgtctgttatccagtcgtttag-------tgaagctcaaggctcaagcaagcaacatcggctgacccacaag |
309 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||| |||||||||| || |
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| T |
45735028 |
cccatattgaatggtggaaggaaatggccgtctgttatccagtcatttagactttagtgaagctcaag---caagcaagtaacatcagctgacccacgag |
45734932 |
T |
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| Q |
310 |
acgacccacgttcaacattctcattcttattctttttt |
347 |
Q |
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| T |
45734931 |
acgacacaacttcaacattcttattcttattctttttt |
45734894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 591 - 652
Target Start/End: Complemental strand, 45734417 - 45734356
Alignment:
| Q |
591 |
accttcttcttcttagttctcttccaactcacttgagcctaacccttctacgttctcttctc |
652 |
Q |
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| T |
45734417 |
accttcttcttctcagttctcttccaactcacttgaacctaacccttctatgttctcttctc |
45734356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 45735108 - 45735044
Alignment:
| Q |
57 |
aatttgtaataaggaatacagttaatgcaatcaaatataagaatccgaaatttcaaatatgcttg |
121 |
Q |
| |
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||||||||||||| ||||||| |||| |||||||||||||||||| |||||| ||||||||||| |
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| T |
45735108 |
aatttgtaataagaaatacagctaatacaatcaaatataagaatctaaaattttaaatatgcttg |
45735044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 506
Target Start/End: Complemental strand, 82635 - 82597
Alignment:
| Q |
467 |
cttacttgattctcatgttgggctcttaaccgcccaacac |
506 |
Q |
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| T |
82635 |
cttacttgattctcatgtt-ggctcttaaccgcccaacac |
82597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 506
Target Start/End: Complemental strand, 18125089 - 18125051
Alignment:
| Q |
467 |
cttacttgattctcatgttgggctcttaaccgcccaacac |
506 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |
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| T |
18125089 |
cttacttgattctcatgtt-ggctcttaaccgcccaacac |
18125051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 506
Target Start/End: Complemental strand, 30031167 - 30031132
Alignment:
| Q |
470 |
acttgattctcatgttgggctcttaaccgcccaacac |
506 |
Q |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
30031167 |
acttgattctcatgttgg-ctcttaaccgcccaacac |
30031132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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