View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_45 (Length: 216)
Name: NF11527_low_45
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 11000967 - 11001157
Alignment:
| Q |
14 |
tgaatagtttggtatttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaa |
113 |
Q |
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| T |
11000967 |
tgaatagtttggtgtttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaa |
11001066 |
T |
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| Q |
114 |
aaccaggatagcc--atacaaagatggatttggattgtggtttttgatatgaaaagggaatttgataacttgattaccacatgttaaatct |
202 |
Q |
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| T |
11001067 |
agccaggatagccatatacaaagatggatttggattgtgatttttgatatgaaaagggaatttgataacttgatttccacatgttaaatct |
11001157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 11039732 - 11039550
Alignment:
| Q |
20 |
gtttggtatttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaaaccag |
119 |
Q |
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| T |
11039732 |
gtttggtgtttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaaatctg |
11039633 |
T |
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| Q |
120 |
gatagccatacaaagatggatttggattgtggtttttgatatgaaaagggaatttgataacttgattaccacatgttaaatct |
202 |
Q |
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| T |
11039632 |
gatagccatgcaaagatggatttggattttggtttttgatatggaaagggaatttgataacttgatttccacatgttaaatct |
11039550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 10990217 - 10990031
Alignment:
| Q |
20 |
gtttggtatttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaaaccag |
119 |
Q |
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| T |
10990217 |
gtttggtgtttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaaatctg |
10990118 |
T |
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| Q |
120 |
gatagccatacaaagatggatttggattgtggtttttgatatgaaaagggaatttg---ataacttgattaccacatgttaaatctg |
203 |
Q |
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| T |
10990117 |
gatagccatacaaagatggatttggattttggtttttgatatggaaagggaatttgataataacttgatttccacatcttaaatctg |
10990031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 10906605 - 10906419
Alignment:
| Q |
17 |
atagtttggtatttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaaac |
116 |
Q |
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| T |
10906605 |
atagtttggtgtctgtagtcaatgttcttaacattgagtttcatcgagtgagggagttcaatcattgtttcgttattcgatgaacaaaataactcaaaac |
10906506 |
T |
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| Q |
117 |
caggatagccatacaaagatggatttggattgtggtttttgatatgaaaagggaatttgataacttgattaccacatgttaaatctg |
203 |
Q |
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| T |
10906505 |
ctggatagccatacgaagatggatttggattgtggtttttgatatggaaagggaatttaataacttgatttccacatgttaaatctg |
10906419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 10929112 - 10928926
Alignment:
| Q |
16 |
aatagtttggtatttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaaa |
115 |
Q |
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||||||||||| | ||||||| |||||||| || |||||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
10929112 |
aatagtttggtttgtgtagtcgatgttcttgaccttgagtttcactttatgagggagttcaatcatagtttccttatttgatgaacaaaataaatcaaaa |
10929013 |
T |
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| Q |
116 |
ccaggatagccatacaaagatggatttggattgtggtttttgatatgaaaagggaatttgataacttgattaccacatgttaaatct |
202 |
Q |
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| T |
10929012 |
cctggatagccgcagaaagatggatttggattgtggtttttgatttgaaaaggaaatttgataacttgatttccacatgttaaatct |
10928926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 47 - 202
Target Start/End: Original strand, 10995360 - 10995514
Alignment:
| Q |
47 |
acattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaaaccaggatagccatacaaagatggatttggat |
146 |
Q |
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| T |
10995360 |
acatttagtttcactttgtgagggagttca-tcatagtttcattatttgatgaacaaaataactcaaagccagggtagccacacaaagatggatttggat |
10995458 |
T |
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| Q |
147 |
tgtggtttttgatatgaaaagggaatttgataacttgattaccacatgttaaatct |
202 |
Q |
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| T |
10995459 |
tgtggtttttgatatggaaaagaaatttgataacttgatttccacatgttaaatct |
10995514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 11024673 - 11024491
Alignment:
| Q |
14 |
tgaatagtttggtatttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaa |
113 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
11024673 |
tgaatagtttggtgtttgtagtcaatgttcttgacattgagtttcactttgtgtggaagttcaatgatagtttcattatttgatgtacaaaataactcaa |
11024574 |
T |
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| Q |
114 |
aaccaggatagccatacaaagatggatttggattg-tggtttttgatatgaaaagggaatttgataacttgattaccacatgttaaatct |
202 |
Q |
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| || | ||||||| || |||| | ||||| |||||||||| | |||||||| |||||||||||||| ||||||||||||||| |
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| T |
11024573 |
atcctgaatagccacac----atgggt---gattgacggtttttgattcggaaagggaacttgataacttgatttccacatgttaaatct |
11024491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 10976984 - 10976889
Alignment:
| Q |
32 |
tagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaaaccaggatagcca |
127 |
Q |
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||||||||||||||||||||||||||||| || ||| ||||||||| | ||||| ||||| ||||||| |||||||||||||| ||||||||| |
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| T |
10976984 |
tagtcaatgttcttaacattgagtttcaccgagtgagggagttcaatcgttgtttcgttattcaatgaacagaataactcaaaacctggatagcca |
10976889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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