View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_6 (Length: 618)
Name: NF11527_low_6
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Complemental strand, 4477455 - 4476844
Alignment:
| Q |
1 |
tttggtgtacaggctttctgtgtactgtgtatcgtgtttttacaatacattgtagcttgccctttatgtttagaagataactagtgtaagggccatttaa |
100 |
Q |
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| T |
4477455 |
tttggtgtacatgctttctgtgtactgtgtagcgtgtttttacaagacattgtagcttgccctttatgtttagaagataactagtggaagggccatttaa |
4477356 |
T |
|
| Q |
101 |
cctaattttccactatccatatactccaagttttgtggtttcttctgcaggaaatggcaaaccacggtgcaatcatctaccctagaggaaggaaacttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4477355 |
cctaattttccactatccatatactccaagttttgtggtttcttctgcaggaaatggcaaaccacggtgcaatcatctaccctagaggaaggaaacttct |
4477256 |
T |
|
| Q |
201 |
ttgcccatgcagctgtggctgcttccaccactgcccttgcagcttcctcttcactttctaccatccacacaattgatgcaacctcttcattacttagtac |
300 |
Q |
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| T |
4477255 |
ttgcccatgcagctgtggctgcttccaccactgcccttgcagcttcctcttcactttctaccatccacacaattgatgcaacctcttcattacttagtac |
4477156 |
T |
|
| Q |
301 |
atcccacacctataagcaaaaaatatctataaataaatgataaagccattgaatttgtatgcaagtagtaataataatcataacacgtaccccatcactt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4477155 |
atcccacacctataagcaaaaaatatctataaataaatgataaagccattgaatttgtatgcaagtagtaataataatcataacacgtaccccatcactt |
4477056 |
T |
|
| Q |
401 |
gcaagaacaataaattggtcacttgatgttaaacggtgataccaaatatctggtgtagcaataacaccatggtctttgagtatgaaatctccgaaagctc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4477055 |
gcaagaacaataaattggtcacttgatgttaaacggtgataccaaatatctggtgtagcaataacaccatggtctttgagtatgaaatctccgaaagctc |
4476956 |
T |
|
| Q |
501 |
gagacatggctaggccagggtatttctcgttgggcaaccatactcgttggacatgtggttcttcctttaacgcataaacacaaccgttgcaactccttat |
600 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4476955 |
gagacatggctaggccagggtagttctcgttgggcaaccatactcgttggacatgtggttcttcctttaacgcataaacacaaccgttgcaactccttat |
4476856 |
T |
|
| Q |
601 |
tctctctgcttc |
612 |
Q |
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||||| |||||| |
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| T |
4476855 |
tctctttgcttc |
4476844 |
T |
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