View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11527_low_8 (Length: 553)
Name: NF11527_low_8
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 198 - 539
Target Start/End: Original strand, 25512901 - 25513246
Alignment:
| Q |
198 |
atcttaggatcttttatgt----tgcgtgacttggaaaatgagtatatattagggattgnnnnnnnngagctcttggatctaatttcaggtaacctgttt |
293 |
Q |
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| T |
25512901 |
atcttaggatcttttatgtgagttgagtgacttggaaaatgagtatatattagggattgttttttgtgagctcttggatataatttcaggtaacctgttt |
25513000 |
T |
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| Q |
294 |
atatcactcatttcatagcgggttgaagagttgttttctcccaacataggtcatattttatagcgggttaaagaattgttcttccccctaaacataagtc |
393 |
Q |
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| T |
25513001 |
atattactcatttcatagcgggttgaagagttgttttttcccaacataggtcatattttatagcgggttaaagagttgttcttccccctagacataaatc |
25513100 |
T |
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| Q |
394 |
atattgaatcgaactggataaacatcaatgtgattcctatattcacttaactttgttctctgattatgcttatggatttattttgcacttaattactagg |
493 |
Q |
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| T |
25513101 |
atattgaatcgaactggataaacatcaatgtgattcctatattcacttaactttgttctctgattatgcttatgaatttgttttgcacttaattactagg |
25513200 |
T |
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| Q |
494 |
tttgtttgttgtttgagactaattattagttacagtcgatctttgt |
539 |
Q |
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| T |
25513201 |
tctgtttattatttgagactaattattagttacagtcaatctttgt |
25513246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 2 - 173
Target Start/End: Original strand, 25512699 - 25512870
Alignment:
| Q |
2 |
cataggctatagattatgggggaaatttactcgtattttgagaggccaaaagatggaagttttagagaaatcatagtctaagagttgagttcttttgagt |
101 |
Q |
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| T |
25512699 |
cataggctatagattatgggggaaatttactcgtattttgagaggccaaaagatggaagttttagagaaatcatagtctaagagtttagttcttttgagt |
25512798 |
T |
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| Q |
102 |
aagattcttggattaggaaacgcttttcatacacctttggtagttgaaatttcattagagaaaggatcaaaa |
173 |
Q |
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| T |
25512799 |
aagattcttggattgggaaacgcttttcatacacctttggtagttgaaatttcattagagaaaggatcaaaa |
25512870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 335
Target Start/End: Original strand, 19018043 - 19018108
Alignment:
| Q |
270 |
gatctaatttcaggtaacctgtttatatcactcatttcatagcgggttgaagagttgttttctccc |
335 |
Q |
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| T |
19018043 |
gatctaatttcttataatctctttatatcactcatttcatagaggattggagagttgctttctccc |
19018108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 484
Target Start/End: Original strand, 3887504 - 3887540
Alignment:
| Q |
448 |
gttctctgattatgcttatggatttattttgcactta |
484 |
Q |
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| T |
3887504 |
gttctttgattatgcttgtggatttattttgcactta |
3887540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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