View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11527_low_9 (Length: 531)
Name: NF11527_low_9
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11527_low_9 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Original strand, 42126783 - 42127313
Alignment:
| Q |
1 |
taagagcatagtttggcctcaagaaagaatttccaaaaaatgaaatgcaaatgcatgtagaagcaatgcaaaggatccaagaaagtggtgccaaggcaag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126783 |
taagagcgtagtttggcctcaagaaagaatttccaaaaaatgaaatgcaaatgcatgtagaagcaatgcaaaggatccaagaaagtggtgccaaggcaag |
42126882 |
T |
|
| Q |
101 |
tgaaaatatatagtttgacaaaggaattctatatgctgatttaccgaaacttgcgatgagtatttggaaagtagtgatggaaagataagcaggagaaacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126883 |
tgaaaatatatagtttgacaaaggaattccatatgctgatttaccgaaacttgcgatgaatatttggaaagtagtgatggaaagataagcaggagaaacc |
42126982 |
T |
|
| Q |
201 |
aacaggatagaaatgaaaacaagtgccaagagttgaagtaaatgtatactccactggtgtgacttggacacatccacaataaattcagtagactcagttt |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126983 |
acaaggatagaaatgaaaacaagtgccaagagttgaagtaaatgtatactccactggtgagacttggacacatccacaataaattcagtagactcagttt |
42127082 |
T |
|
| Q |
301 |
cagcttctggagcataggatggattgctcaaaaggtgaggttgtgacttcagcagaaggttctctgagaagttgaccaattcttgaatgcaggatgcact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42127083 |
cagcttctggagcataggatggattgctcaaaaggtgaggttgtgacttcagcagaaggttctctgagaagttgaccaattcttgaatgcaggatgcact |
42127182 |
T |
|
| Q |
401 |
gaaaacatctatagctgcaactgtaactccaaggaaatctgagagtttttgagttgctttaaccacgctgattgaatccattccataggttgacatgttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42127183 |
gaaaacatctatagctgcaactgtaactccaaggaaatctgagagtttttgagttgctttaaccacgctgattgaatccattccataggttgacatgttg |
42127282 |
T |
|
| Q |
501 |
tctgtaacagagattttgcttaccgggattc |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
42127283 |
tctgtaacagagattttgcttaccgggattc |
42127313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 376 - 518
Target Start/End: Original strand, 24930738 - 24930880
Alignment:
| Q |
376 |
ccaattcttgaatgcaggatgcactgaaaacatctatagctgcaactgtaactccaaggaaatctgagagtttttgagttgctttaaccacgctgattga |
475 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| |||||||||| || ||||||||||| || |||||||||||||||||||| | ||||| |
|
|
| T |
24930738 |
ccaattcttgaatgcatgatgcagtgaaaacatctattgctgcaactggtgtacctaggaaatctgatagcttttgagttgctttaaccacaccaattga |
24930837 |
T |
|
| Q |
476 |
atccattccataggttgacatgttgtctgtaacagagattttg |
518 |
Q |
| |
|
|| |||||||||| || || |||||| || || ||||||||| |
|
|
| T |
24930838 |
gtcgattccataggatgtcaggttgtcagtgactgagattttg |
24930880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 489
Target Start/End: Original strand, 24930457 - 24930566
Alignment:
| Q |
380 |
ttcttgaatgcaggatgcactgaaaacatctatagctgcaactgtaactccaaggaaatctgagagtttttgagttgctttaaccacgctgattgaatcc |
479 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||| | ||||| || |
|
|
| T |
24930457 |
ttcttgaatgcatgatgcagtgaaaacatctattgctgcaactggtgtcccaagaaaatccgagagtttttgagttgctttaaccacaccaattgagtca |
24930556 |
T |
|
| Q |
480 |
attccatagg |
489 |
Q |
| |
|
|||||||||| |
|
|
| T |
24930557 |
attccatagg |
24930566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 24930101 - 24930168
Alignment:
| Q |
24 |
aaagaatttccaaaaaatgaaatgcaaatgcatgtagaagcaatgcaaaggatccaagaaagtggtgc |
91 |
Q |
| |
|
|||||| ||||||| ||||||||||||| ||| || ||||| |||||||| ||||||| ||| ||||| |
|
|
| T |
24930101 |
aaagaacttccaaacaatgaaatgcaaacgcaagtggaagcgatgcaaagaatccaagcaagaggtgc |
24930168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University