View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11528_high_5 (Length: 206)
Name: NF11528_high_5
Description: NF11528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11528_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 36305816 - 36305642
Alignment:
| Q |
13 |
agcaaaggtaaccctggctttaaaccttacacagaaccctccaatttatgtaattaataagcataacaaaaattgaactataacaaagagtggagtatga |
112 |
Q |
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| T |
36305816 |
agcaaaggtaaccctggctttaaaccttacacagaaccctccaagttatgtaattaataagcataacaaaaaatgaactataacaaagagtggagtatga |
36305717 |
T |
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| Q |
113 |
tgaacacaaaacctgtcttcttgctcgagaacgagcagccgattcacgatttttcaacattctacgttgccttcg |
187 |
Q |
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| T |
36305716 |
tgaacacaaaacctgtcttcttgctcgagaacgagcagccgattcacgatttttcaacattctacgttgccttcg |
36305642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 31 - 181
Target Start/End: Complemental strand, 36321297 - 36321147
Alignment:
| Q |
31 |
tttaaaccttacacagaacc---ctccaatttatgtaattaataagcataacaaaaattgaactataacaaagagtggagtatgatgaacacaaaacctg |
127 |
Q |
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| T |
36321297 |
tttaaaccttacacagatgcattctccaagttatgtgatcaataagtataacaa---ttgaactataacaaagagtagagtatgatgagcacaaaacctg |
36321201 |
T |
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| Q |
128 |
tcttcttgctcgagaacgagcagccgattcacgatttttcaacattctacgttg |
181 |
Q |
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| T |
36321200 |
ttttcttgctcgagaacgtgcagccgattctcgatttttcatcattctgcgttg |
36321147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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