View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11528_low_1 (Length: 804)
Name: NF11528_low_1
Description: NF11528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11528_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 486 - 794
Target Start/End: Original strand, 7500243 - 7500551
Alignment:
| Q |
486 |
gcggttggagtagctatgaaggaaggagagttctgaagatgcgtaggaatgtgtgatttgtgtcttaactttcaagggggttccctacttatatgttgtg |
585 |
Q |
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| T |
7500243 |
gcggttggagtagctatgaaggaaggagagttctgaagatgcgtaggaatgtgtgatttgtgtcttaactttcaagggggttccctacttatatgttgtg |
7500342 |
T |
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| Q |
586 |
tattaaaataataagttgttttttatgcatatgtttctatctatgttttaggcttgtttggtacagaagttgaaggtttctgtttcatgaagtttgctta |
685 |
Q |
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| T |
7500343 |
tattaaaataataagttgttttttatgcatatgtttctatctatgttttaggcttgtttggtacagaagttgaaggtttctgtttcatgaagtttgctta |
7500442 |
T |
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| Q |
686 |
gcactaatgtagctgtattaattagaataagaactactgttaggcactcatgtgtattttaataagaaccttcaatcttcaatctttttctaatgctatg |
785 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |
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| T |
7500443 |
gcactaatgtagctgtattaattagaataagaactactgttaggcactcatgtgtattttaataagaaccttcaaccttcaatctttttgttatgctatg |
7500542 |
T |
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| Q |
786 |
taatctctg |
794 |
Q |
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||||||||| |
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| T |
7500543 |
taatctctg |
7500551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 486 - 794
Target Start/End: Original strand, 15171463 - 15171769
Alignment:
| Q |
486 |
gcggttggagtagctatgaaggaaggagagttctgaagatgcgtaggaatgtgtgatttgtgtcttaactttcaagggggttccctacttatatgttgtg |
585 |
Q |
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||||||||||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
15171463 |
gcggttggagtagctttgatggaagaagagttctgaagatgcgtaggagtgtgtgatttgtgtcttaactttcaagagggttcactacttatatgttgtg |
15171562 |
T |
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| Q |
586 |
tattaaaataataagttgttttttatgcatatgtttctatct-atgttttaggcttgtttggtacagaagttgaaggtttctgtttcatgaagtttgctt |
684 |
Q |
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| T |
15171563 |
tattaaaataataagctgttatttatgcatatgtttctatctaaggtttcatgcttgtttggcacagaagttgaaggtttatgtttcaggaagtttgctt |
15171662 |
T |
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| Q |
685 |
agcactaatgtagctgtattaattagaataagaactactgttaggcactcatgtgtattttaataagaaccttcaatcttcaatctttttctaatgctat |
784 |
Q |
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|||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||| |||| | ||||||| |
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| T |
15171663 |
agcactgatgaggctgtattgattagaataagaactactgttaggcactc--gtgtatttcaataaaaaccttcaatcctcaatc-ttttgttatgctat |
15171759 |
T |
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| Q |
785 |
gtaatctctg |
794 |
Q |
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|||||||||| |
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| T |
15171760 |
gtaatctctg |
15171769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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