View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11528_low_2 (Length: 466)
Name: NF11528_low_2
Description: NF11528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11528_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 9639280 - 9639724
Alignment:
| Q |
1 |
tgatgctattgtgaatgcaagaagagtgcctacactaacctgtagaacacaagcaaagtaaacattagtactataattcctgcaagttttaacataaata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9639280 |
tgatgctattgtgaatgcaagaagagtgcctacactaacctgtagaacacaagcaaagtaaacattagtactataattcctgcaagttttaacataaata |
9639379 |
T |
|
| Q |
101 |
ccttgtaaaacacagatattgattagtaacannnnnnngcctttggtaacaacaaatgttatctaataagacttaccatgccagcaagttgagagacatc |
200 |
Q |
| |
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||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9639380 |
tcttgtaaaacacagatatt----agtaacatttttttgcctttggcaacaacaaatgttatctaataagacttaccatgccagcaagttgagagacatc |
9639475 |
T |
|
| Q |
201 |
catgaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctctgcttatttatgtcagnnnnnnntgatggtaga |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
9639476 |
catgaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctctgcttatttatgtcagaaaaaaatggtggtaga |
9639575 |
T |
|
| Q |
301 |
agtccatcccttgccatagccatcaaaattcttggctgtgagtcattcaacaaaacacatgaataatgaatcattttatggatctttggtttgtttagag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9639576 |
agtccatcccttgccatagccatcaaaattcttggctgtgagtcattcaacaaaacacatgaataatgaatcattttagggatctttggtttgtttagag |
9639675 |
T |
|
| Q |
401 |
atagagggttccaattaattttacctggggcaacattccaccaagcaat |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9639676 |
atagagggttccaattaattttacctggggcaacattccaccaagcaat |
9639724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 169 - 347
Target Start/End: Original strand, 9648566 - 9648744
Alignment:
| Q |
169 |
agacttaccatgccagcaagttgagagacatccatgaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctct |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| | |
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| T |
9648566 |
agacttaccatgccagcaagttgagagacatccatgaaaaatgccaaggcggcagcaacaaggccggtaactatggtactctttacaggaacatggctgt |
9648665 |
T |
|
| Q |
269 |
gcttatttatgtcagnnnnnnntgatggtagaagtccatcccttgccatagccatcaaaattcttggctgtgagtcatt |
347 |
Q |
| |
|
|||||||||| |||| || ||| || | ||| |||||||||||||||||||||||||||||||| ||| |||| |
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| T |
9648666 |
gcttatttatatcagaaaaaaatggtggcagcaatccgtcccttgccatagccatcaaaattcttggctgagaggcatt |
9648744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 169 - 347
Target Start/End: Original strand, 9654583 - 9654761
Alignment:
| Q |
169 |
agacttaccatgccagcaagttgagagacatccatgaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctct |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| | |
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| T |
9654583 |
agacttaccatgccagcaagttgagagacatccatgaaaaatgccaaggcggcagcaacaaggccggtaactatggtactctttacaggaacatggctgt |
9654682 |
T |
|
| Q |
269 |
gcttatttatgtcagnnnnnnntgatggtagaagtccatcccttgccatagccatcaaaattcttggctgtgagtcatt |
347 |
Q |
| |
|
|||||||||| |||| || ||| || | ||| |||||||||||||||||||||||||||||||| ||| |||| |
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| T |
9654683 |
gcttatttatatcagaaaaaaatggtggcagcaatccgtcccttgccatagccatcaaaattcttggctgagaggcatt |
9654761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 169 - 338
Target Start/End: Original strand, 9628482 - 9628651
Alignment:
| Q |
169 |
agacttaccatgccagcaagttgagagacatccatgaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctct |
268 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||||||||||||| |||||||| ||||| | |
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| T |
9628482 |
agacttaccatcccagcaagttgagagacatccatgaaaaaagccaaggctgcaggaacaaggccagtgactatggtactcttaacaggaacatggctgt |
9628581 |
T |
|
| Q |
269 |
gcttatttatgtcagnnnnnnntgatggtagaagtccatcccttgccatagccatcaaaattcttggctg |
338 |
Q |
| |
|
|||||||||| |||| || ||| || ||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
9628582 |
gcttatttatttcagagaaaaatggtggcagtagtccatcccttgccattgccatcaaaagtcttggctg |
9628651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 181 - 366
Target Start/End: Original strand, 9614663 - 9614848
Alignment:
| Q |
181 |
ccagcaagttgagagacatccatgaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctctgcttatttatgt |
280 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||| || ||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
9614663 |
ccagaaagttgagagacatccatgaaaaatgccaaggctgcaggaacaaggccagtgacaatggtactcttaacaggaacatggctgtgcttatttatgt |
9614762 |
T |
|
| Q |
281 |
cagnnnnnnntgatggtagaagtccatcccttgccatagccatcaaaattcttggctgtgagtcattcaacaaaacacatgaataa |
366 |
Q |
| |
|
||| || ||| | |||||||||||||||||||||||||||||||||||||| || |||| ||||||||| || ||||| |
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|
| T |
9614763 |
cagaaaaaaatggtggcaatagtccatcccttgccatagccatcaaaattcttggctgagaagcattaaacaaaacatatcaataa |
9614848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 9613798 - 9613859
Alignment:
| Q |
7 |
tattgtgaatgcaagaagagtgcctacactaacctgtagaacacaagcaaagtaaacattag |
68 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
9613798 |
tattgtgaatgcaataagagtgcctacactaacctgtagaagacaagcaaaataaacattag |
9613859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 9627970 - 9628036
Alignment:
| Q |
10 |
tgtgaatgcaagaagagtgcctacactaacctgtagaacacaagcaaagtaaacattagtactataa |
76 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || |||| |||| |||||||||||||||||| |
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|
| T |
9627970 |
tgtgaatgcaataagagtgcctacactaacctgtaaaatacaaacaaaataaacattagtactataa |
9628036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 9648326 - 9648392
Alignment:
| Q |
11 |
gtgaatgcaagaagagtgcctacactaacctgtagaacacaagcaaagtaaacattagtactataat |
77 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||| ||||||||| || || ||||||||||||| |
|
|
| T |
9648326 |
gtgaatgcaagaagagtaccaacactaacctgtagaagacaagcaaaatacactttagtactataat |
9648392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 9654343 - 9654409
Alignment:
| Q |
11 |
gtgaatgcaagaagagtgcctacactaacctgtagaacacaagcaaagtaaacattagtactataat |
77 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||| ||||||||| || || ||||||||||||| |
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|
| T |
9654343 |
gtgaatgcaagaagagtaccaacactaacctgtagaagacaagcaaaatacactttagtactataat |
9654409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 449
Target Start/End: Original strand, 9649726 - 9649772
Alignment:
| Q |
403 |
agagggttccaattaattttacctggggcaacattccaccaagcaat |
449 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
9649726 |
agagggttccaattagttttacctgaggcaacattccaccaagcaat |
9649772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 449
Target Start/End: Original strand, 9655743 - 9655789
Alignment:
| Q |
403 |
agagggttccaattaattttacctggggcaacattccaccaagcaat |
449 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
9655743 |
agagggttccaattagttttacctgaggcaacattccaccaagcaat |
9655789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 170 - 355
Target Start/End: Complemental strand, 33644659 - 33644474
Alignment:
| Q |
170 |
gacttaccatgccagcaagttgagagacatccatgaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctctg |
269 |
Q |
| |
|
|||||||||| || ||||| | |||||| ||||| |||| || ||| ||||||| | ||||| |||| ||| || | ||| ||||||||| | | || |
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| T |
33644659 |
gacttaccatccctgcaagatcagagacttccatagaaaatgctaagactgcagcagctaggccggtaattattgtgcccttgacaggaactagagtgtg |
33644560 |
T |
|
| Q |
270 |
cttatttatgtcagnnnnnnntgatggtagaagtccatcccttgccatagccatcaaaattcttggctgtgagtcattcaacaaaa |
355 |
Q |
| |
|
||||||||||||| || ||| || ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
33644559 |
cttatttatgtcacaaaaaaatggtggcagtagtccatcccttgccatagccatcaaaattcgtggctgtgaaacattgaacaaaa |
33644474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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