View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11528_low_3 (Length: 395)
Name: NF11528_low_3
Description: NF11528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11528_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 22644479 - 22644251
Alignment:
| Q |
14 |
aacatgacatgggatagttttgagattccaaagtttggaccataacgtggttggttttgcaatacttcatactcctctcctttaaggatttgtgttctga |
113 |
Q |
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| T |
22644479 |
aacatgacatgggatagttttgagattccaaagtttggaccataacgtggttggttttgcaatacttcatactcctctcctttaaggatttgtgttctga |
22644380 |
T |
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| Q |
114 |
attcacagatcattgatttgcttcccagatgaacatatcactcagctgactagtagataaaggaacttgaagaatttgtatcgcctcaaatgggagaaag |
213 |
Q |
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| T |
22644379 |
attcacagatcattgatttgcttcccagatgaacatatcactcagctgactagtagataaaggaacttgaagaatttgtatcgcctcaaatgggagaaag |
22644280 |
T |
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| Q |
214 |
agatcgttgacgagttgaatattgcattc |
242 |
Q |
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| T |
22644279 |
agatcgttgacgagttgaatattgcattc |
22644251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 243 - 389
Target Start/End: Complemental strand, 22640404 - 22640258
Alignment:
| Q |
243 |
ccccagctcaacattgattaaatcaagaatctgttaacaataaaactataattatatgtaggatatggttcaaaacgtgttggagataaaagacacacta |
342 |
Q |
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| T |
22640404 |
ccccagctcaacattgattaaatcaagaatctgttaacaataaaactataattatatgtaggatatggttcaaaacgtgttggagataaaagacacacta |
22640305 |
T |
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| Q |
343 |
gttagagaggttatgacacctcttgtagatgttgttgcctttgcttc |
389 |
Q |
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| T |
22640304 |
gttagagaggttatgacacctcttgtagatgttgttgccttttcttc |
22640258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 380
Target Start/End: Complemental strand, 41398675 - 41398596
Alignment:
| Q |
301 |
taggatatggttcaaaacgtgttggagataaaagacacactagttagagaggttatgacacctcttgtagatgttgttgc |
380 |
Q |
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||||||||| | |||| |||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||||||| |
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| T |
41398675 |
taggatatgatcgaaaatgtgttggagataaaagacacacatgtcagagaagttatgacgcctcttgttgatgttgttgc |
41398596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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