View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11529_high_12 (Length: 276)
Name: NF11529_high_12
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 9998191 - 9998453
Alignment:
| Q |
1 |
tttacctcataacataagcctttgattgcatcaagaatttaatttgtatgcactatatgtataaaaaacgtgacaataaattataggatgacggtgtaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9998191 |
tttacctcataacataagcctttgattgcatcaagagtttaatttgtatgcactatatgtataaaaaacgtgacaataaattataggatgacggtgtaaa |
9998290 |
T |
|
| Q |
101 |
ataggtggcaatatattattgcataaataattgtatattaacttaaccctaaaattgtttgtttatcaatcatcatattagtatatgcttaaaattctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9998291 |
ataggtggcaatatattattgcataaataattgtatattaacttaaccctaaaattgtttgtttatcaatcatcatattagtatatgcttaaaattggat |
9998390 |
T |
|
| Q |
201 |
gttttcatgcagggttttgtcatatcagattgggagggaatcgacaggataacttcacctcct |
263 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9998391 |
gttttaatgcagggttttgtcatatcagattgggagggaatcgacaggataacttcacctcct |
9998453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 10003936 - 10004169
Alignment:
| Q |
30 |
atcaagaatttaatttgtatgcactatatgtataaaaaacgtgacaataaattataggatgacggtgtaaaataggtggcaatatattattgcataaata |
129 |
Q |
| |
|
|||||||||||| ||| |||| | ||| ||| ||||| |||| ||||||||||||| ||||| |||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
10003936 |
atcaagaatttattttttatgaattatctgtgtaaaagacgtaacaataaattatactatgactgtgtaaaataggtgactatatattatagcataaata |
10004035 |
T |
|
| Q |
130 |
attgtatattaacttaaccctaaaattgtttgtttatcaatcatcatattagtatatgcttaaaattctatgttttcatgcagggttttgtcatatcaga |
229 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10004036 |
attgtatattaacttaagcctgaaattgtttatttatcgatcatcatattagtatatgcttaaaattctatgtttttatgcagggttttgtcatatcaga |
10004135 |
T |
|
| Q |
230 |
ttgggagggaatcgacaggataacttcacctcct |
263 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||| |
|
|
| T |
10004136 |
ttggaagggaattgacaggataacttcacctcct |
10004169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 9991183 - 9991291
Alignment:
| Q |
148 |
cctaaaattgtttgtttatcaatcatcatattagtatatgcttaaaattctatgttttcatgcagggttttgtcatatcagattgggagggaatcgacag |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9991183 |
cctaaaattgtttgtttatcaatcatcatattagtatacgcctaaaattatatgttttcatgcagggttttgtcatatcagattgggagggaattgacag |
9991282 |
T |
|
| Q |
248 |
gataacttc |
256 |
Q |
| |
|
||||||||| |
|
|
| T |
9991283 |
gataacttc |
9991291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 10012693 - 10012779
Alignment:
| Q |
177 |
attagtatatgcttaaaattctatgttttcatgcagggttttgtcatatcagattgggagggaatcgacaggataacttcacctcct |
263 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10012693 |
attagtatatgcttaaaattctttgttttcctttagggttttaccatatcagattgggagggaattgacaggataacttcacctcct |
10012779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University