View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11529_high_16 (Length: 247)
Name: NF11529_high_16
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 11818861 - 11818735
Alignment:
| Q |
99 |
agcatatgtttatattatctatactcactcgctaccttttgttttaattaggtatggacgaataggtatctacaagacacacttattcgggagtccaagc |
198 |
Q |
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| T |
11818861 |
agcatatgtttatagtttctatactcactcgctagcttttgtttta----ggtatggacgaataggtatctacaagacacatttattcgggagtccaagc |
11818766 |
T |
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| Q |
199 |
atcatcgtttgtgaggctgacatgtgtaggc |
229 |
Q |
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| T |
11818765 |
atcatcgtttgtgaggctgacatgtgtaggc |
11818735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 11804863 - 11804749
Alignment:
| Q |
107 |
tttatattatctatactcactcgctaccttttgttttaattaggtatggacgaataggtatctacaagacacacttattcgggagtccaagcatcatcgt |
206 |
Q |
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| T |
11804863 |
tttatattttctatactcactcgttatctttggtttt---taggaatggacggactggtatctacaagacgcacttattcgggagtccaagcatcatcat |
11804767 |
T |
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| Q |
207 |
ttgtgaggctgacatgtg |
224 |
Q |
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| T |
11804766 |
ttgtgaggctgacatgtg |
11804749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11818951 - 11818893
Alignment:
| Q |
1 |
ttcatcaacaaccttgttttcaagtctcttttatttttctcccattgcaattcttcatt |
59 |
Q |
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| T |
11818951 |
ttcatcaacaaccttgtttccaagtctcttttatttttctccgattgcaattcttcatt |
11818893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 11827126 - 11827043
Alignment:
| Q |
146 |
ttaggtatggacgaataggtatctacaagacacacttattcgggagtccaagcatcatcgtttgtgaggctgacatgtgtaggc |
229 |
Q |
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| T |
11827126 |
ttaggtatggaagaactggtatctacaagtcgcacttgtttgggagtccaagcatcatcatctgtgattctgatatgtgtaggc |
11827043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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