View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11529_high_2 (Length: 766)
Name: NF11529_high_2
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 681; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 19 - 755
Target Start/End: Original strand, 36330453 - 36331198
Alignment:
| Q |
19 |
accttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctagcattcttctcaattgattgaaccctaatctttagtttattgt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330453 |
accttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctaccattcttctcaattgattgaaccctaatctttagtttattgt |
36330552 |
T |
|
| Q |
119 |
gatcaacaaaatttggattaagaagatcctctatggtaatgagtccatcaccacacacaacaacctcgcaactaggatcaaaagcatcactcatcatcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330553 |
gatcaacaaaatttggattaagaagatcctctatggtaatgagtccatcaccacacacaacaacctcgcaactaggatcaaaagcatcactcatcatcaa |
36330652 |
T |
|
| Q |
219 |
cttcttattctctgcattaccttgaaaagtctcagtaggcataccagtaattccttgtatcatcctcacatgtcttccctcagcatttgcatccctcttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330653 |
cttcttattctctgcattaccttgaaaagtctcagtaggcataccagtaattccttctatcatcctcacatgtcttccctcagcatttgcatccctcttt |
36330752 |
T |
|
| Q |
319 |
gttccaatgtaacaatcatcgtcattctcgaactcattatcagattgtacattctcatcctaa------aaatagaaatagaagggatgagttgcctgaa |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36330753 |
gttccaatgtaacaatcatcgtcattctcgaactcattatcagattgtacattctcatcctaaaaatagaaatagaaatagaagggatgagttgcctgaa |
36330852 |
T |
|
| Q |
413 |
acatgaataattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaacgaaactatttctatccaaacagagc |
512 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
36330853 |
acatgaagaattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaaggaaactatttctatccaaacagagc |
36330952 |
T |
|
| Q |
513 |
gttaaaaggaaaagctaccttgaaatgacaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactcttcctctgcatcttgt |
612 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330953 |
gttaaaaggaaaagctaccttgaaatgagaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactcttcctctgcatcttgt |
36331052 |
T |
|
| Q |
613 |
tcctcgtattcata---aacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcaaacgaggattggttttcg |
709 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36331053 |
tcctcgtattcataaacaacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcgaacgaggattggttttcg |
36331152 |
T |
|
| Q |
710 |
actttttacttcggaggttggtgccgttcatctgttttcgtttctt |
755 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
36331153 |
actttttacttcggaggttggtgtcgttcatctgttttcgtttctt |
36331198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 44369556 - 44369613
Alignment:
| Q |
19 |
accttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctag |
76 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| ||||||||||| ||| | |||||||| |
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|
| T |
44369556 |
accttcctttccaccttcgcttgatctgcctttggaagtggtgcatgaacagttctag |
44369613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 52929621 - 52929692
Alignment:
| Q |
19 |
accttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctagcattcttctcaatt |
90 |
Q |
| |
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||||||||||||||||| |||||||| |||| ||||||||||| ||| | |||||||| | | ||||||||| |
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| T |
52929621 |
accttcctttctacctttgcttgatctgcctttggaagtggtgcatgaacagttctagaactattctcaatt |
52929692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 20237921 - 20237864
Alignment:
| Q |
19 |
accttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctag |
76 |
Q |
| |
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||||||||||| ||||| |||||||| |||| ||||||||||| ||| | |||||||| |
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| T |
20237921 |
accttcctttccaccttcgcttgatctgcctttggaagtggtgcatgaacagttctag |
20237864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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