View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11529_high_6 (Length: 519)
Name: NF11529_high_6
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 493
Target Start/End: Original strand, 37887625 - 37888097
Alignment:
| Q |
13 |
gagatttcgaagaagatcaaaacagcaataacaacagcaatagcaatagctatagcgtgagtcacaacaaggttgattccggtggtgatgctgtatcatc |
112 |
Q |
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| T |
37887625 |
gagatttcgaagaagatcaaaacagcaataacaa------tagcaatagctatagcgtgagtcacaacaaggttgattccggtggtgatgttgtatcatc |
37887718 |
T |
|
| Q |
113 |
atctactgttttgtcagattctgaaagttgcgttgcaagaacaaataaaaggtatcgttacgttaatattgatgagttatatagagctacatctcccttg |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37887719 |
atctactgttttgtcagattctgaaagttgctttgcaagaacaaataagaggtatcgttacgttaatattgatgagttatatagagctacatctcctttg |
37887818 |
T |
|
| Q |
213 |
cctcctgttaaagccaggatgatcaagagaagaaagtgataactgatgaatgatgtcttaacnnnnnnnnnnnnnnnnnntgttctttgctgaatcgtgt |
312 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||| |||||||||||||||||||| |
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| T |
37887819 |
cctcctgttaaagccaggatgatcaagagaagaaaatgataaccgatgaatgatatcttaacatatatatgtatatat--tgttctttgctgaatcgtgt |
37887916 |
T |
|
| Q |
313 |
tttaatagattagttactaatttcaatgtttgtaacttttgatgtgtggattatgtatatattaatatttcactttcctatactgcatatatttgttttg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37887917 |
tttaatagattagttactaatttcaatgtttgtaacttttgatgtgtggattatgtatatattaatatttcactttcctatactgcatatatttgttttg |
37888016 |
T |
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| Q |
413 |
gttaaataatgtgaagatttagatgtgattagaacccaattgaaatttgatcaaatctttgcatcttttgttaattttata |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37888017 |
gttaaataatgtgaagatttagatgtgattagaacccaattgaaatttgatcaaatctttgcatcttttgttaattttata |
37888097 |
T |
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