View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11529_high_9 (Length: 406)

Name: NF11529_high_9
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11529_high_9
NF11529_high_9
[»] chr6 (6 HSPs)
chr6 (10-390)||(26709659-26710034)
chr6 (203-277)||(3181026-3181100)
chr6 (171-272)||(33089513-33089614)
chr6 (163-270)||(4006713-4006820)
chr6 (198-255)||(33832252-33832309)
chr6 (186-230)||(26709547-26709591)
[»] chr5 (2 HSPs)
chr5 (163-277)||(2568657-2568771)
chr5 (233-277)||(11104974-11105018)
[»] chr1 (3 HSPs)
chr1 (193-277)||(10199365-10199449)
chr1 (193-263)||(43338145-43338215)
chr1 (159-256)||(7136976-7137073)
[»] chr7 (1 HSPs)
chr7 (157-245)||(425813-425901)
[»] chr2 (6 HSPs)
chr2 (198-277)||(8017468-8017547)
chr2 (164-255)||(43984982-43985073)
chr2 (221-275)||(5902508-5902562)
chr2 (198-255)||(35378511-35378568)
chr2 (193-254)||(40158747-40158808)
chr2 (221-277)||(1801725-1801781)
[»] chr3 (4 HSPs)
chr3 (221-275)||(34958351-34958404)
chr3 (198-271)||(34954116-34954188)
chr3 (232-265)||(38665272-38665305)
chr3 (164-264)||(39602180-39602280)
[»] chr4 (1 HSPs)
chr4 (226-275)||(42641598-42641647)
[»] chr8 (1 HSPs)
chr8 (197-273)||(11376736-11376812)


Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 26710034 - 26709659
Alignment:
Q  10 agaagaacgccaatgaacagctcatcaaagcagcttataccaaaaaggatcacctcgattcttttcccgattatcgccgcttcgaaattaacggtaaccg 109  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26710034 agaagaacgccaatcaacagctcatcaaagcagcttataccaaaaaggatcacctcgattcttttcccgattatcgccgcttcgaaattaacggtaaccg 26709935  T
Q  110 cttttgagtttgttgaatgcagttagattagtaatgcagttagatattgtaatctataagttgttttcatatgatatcattaggagcctatgaaaataag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  26709934 cttttgagtttgttgaatgcagttagattagtaatgcagttagatattgtaatctataagctgttttcatatgatatcattaggagcctatgaaaataa- 26709836  T
Q  210 ctggaaataaattataaacatttcataagctgttttcacaagttcttcaaaatagtatcacaagtgctatagactcaactaagtgaatccaaacacgtcc 309  Q
        ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||    
T  26709835 ----aaataaattataaacatgtcataagctgttttcacaagttcttcaaaatagtatcacaagtgctatagactcaactaggcgaatccaaacacctcc 26709740  T
Q  310 taagaatttttgttactgtttgatagaaaaacaacagataactgataagctaacgtataggggatacactagctgatagtg 390  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26709739 taagaatttttgttactgtttgatagaaaaacaacagataactcataagctaacgtataggggatacactagctgatagtg 26709659  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 3181100 - 3181026
Alignment:
Q  203 aaataagctggaaataaattataaacatttcataagctgttttcacaagttcttcaaaatagtatcacaagtgct 277  Q
    |||||||| |||||||| |||||||||||||||||| ||||| ||  || ||||  ||||||| |||||||||||    
T  3181100 aaataagccggaaataacttataaacatttcataagttgtttacattagctctttcaaatagtctcacaagtgct 3181026  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 33089513 - 33089614
Alignment:
Q  171 tgttttcatatgatatcattaggagcctatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttcttcaaaatagtatcac 270  Q
    |||||||||| | |||| |  |||||||||||||||||||   ||| || |||||||||| || ||||||||||||| |||||||   ||||||| ||||    
T  33089513 tgttttcataagctatcttggggagcctatgaaaataagcgtaaaacaacttataaacatgtcctaagctgttttcataagttctctgaaatagtctcac 33089612  T
Q  271 aa 272  Q
    ||    
T  33089613 aa 33089614  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 4006713 - 4006820
Alignment:
Q  163 ctataagttgttttcatatgatatcattaggagcctatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttcttcaaaat 262  Q
    |||||||||||||||||| | ||||  |  |||  ||||||||||||||| |||||| ||||  |||| || |||| |||||||||||| ||||| |||     
T  4006713 ctataagttgttttcataagctatccctgagaggttatgaaaataagctgaaaataacttatggacatatcgtaagttgttttcacaagctcttccaaag 4006812  T
Q  263 agtatcac 270  Q
    ||| ||||    
T  4006813 agtttcac 4006820  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 33832309 - 33832252
Alignment:
Q  198 tatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttct 255  Q
    ||||||||||||||  ||| || |||||||||| ||||||| |||||||| |||||||    
T  33832309 tatgaaaataagctaaaaacaacttataaacatgtcataagttgttttcataagttct 33832252  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 26709591 - 26709547
Alignment:
Q  186 tcattaggagcctatgaaaataagctggaaataaattataaacat 230  Q
    |||| |||||| ||||||||||||||||||| ||||| |||||||    
T  26709591 tcatgaggagcttatgaaaataagctggaaacaaattctaaacat 26709547  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 277
Target Start/End: Original strand, 2568657 - 2568771
Alignment:
Q  163 ctataagttgttttcatatgatatcattaggagcctatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttcttcaaaat 262  Q
    |||||||||||||||||| | ||||||   ||||  |||||||||||||  |||||| |||| || || |||||||||||||||| ||||||||| |||     
T  2568657 ctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataagctgttttcataagttcttctaaac 2568756  T
Q  263 agtatcacaagtgct 277  Q
    ||| || ||||||||    
T  2568757 agtctctcaagtgct 2568771  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 11104974 - 11105018
Alignment:
Q  233 cataagctgttttcacaagttcttcaaaatagtatcacaagtgct 277  Q
    ||||| ||||||||| ||||||| | |||||||||||||||||||    
T  11104974 cataaactgttttcataagttctcccaaatagtatcacaagtgct 11105018  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 10199449 - 10199365
Alignment:
Q  193 gagcctatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttcttcaaaatagtatcacaagtgct 277  Q
    |||| ||||||||||||||| ||| || |||| ||||| ||||||||| ||||||  |||||| | ||||||| |||||||||||    
T  10199449 gagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgct 10199365  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 43338145 - 43338215
Alignment:
Q  193 gagcctatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttcttcaaaata 263  Q
    |||| |||||||||| |||| ||||| ||||| ||||| ||||||||||||| || ||||||||| |||||    
T  43338145 gagcttatgaaaataggctgaaaatagattatgaacatgtcataagctgtttccataagttcttctaaata 43338215  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 7137073 - 7136976
Alignment:
Q  159 taatctataagttgttttcatatgatatcattaggagcctatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttctt 256  Q
    ||||||||||| |||||||||| | |||| |   || | ||||||||||||||| |||||| |||| || || ||||||||  |||||| ||||||||    
T  7137073 taatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaatatgtcataagcgattttcataagttctt 7136976  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 425901 - 425813
Alignment:
Q  157 tgtaatctataagttgttttcatatgatatcattaggagcctatgaaaataagctggaaataaattataaacatttcataagctgtttt 245  Q
    ||||||||||||| || |||||||   ||||||   |||||  |||||||||||||||||||  |||| ||||| ||||||||||||||    
T  425901 tgtaatctataagctgctttcataaactatcatggagagccagtgaaaataagctggaaatagcttatgaacatgtcataagctgtttt 425813  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 8017468 - 8017547
Alignment:
Q  198 tatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttcttcaaaatagtatcacaagtgct 277  Q
    |||||||||| || | ||| ||||||| ||||| |||||||||||||||| ||||||| | ||||| |  ||||||||||    
T  8017468 tatgaaaatacgcagaaaacaaattatgaacatatcataagctgttttcataagttctcccaaataatcgcacaagtgct 8017547  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 43985073 - 43984982
Alignment:
Q  164 tataagttgttttcatatgatatcattaggagcctatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttct 255  Q
    ||||||||||||||||| | |||| | | |||| ||||||||||||||| ||||| || || ||||| | |||||||| ||| |||| ||||    
T  43985073 tataagttgttttcataagctatcttgaagagcttatgaaaataagctgaaaatagataatgaacatattataagctgatttaacaaattct 43984982  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 5902562 - 5902508
Alignment:
Q  221 ttataaacatttcataagctgttttcacaagttcttcaaaatagtatcacaagtg 275  Q
    |||| ||||| |||||||||||||||| ||||||||| ||| ||| |||||||||    
T  5902562 ttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagtg 5902508  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 35378568 - 35378511
Alignment:
Q  198 tatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttct 255  Q
    ||||||||||||||| |||||| |||| ||||  |||| ||||||||||| |||||||    
T  35378568 tatgaaaataagctgaaaataacttatgaacaagtcatcagctgttttcataagttct 35378511  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 40158747 - 40158808
Alignment:
Q  193 gagcctatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttc 254  Q
    |||| |||| || ||||||| ||| || |||||||||| |||||||||||||||| ||||||    
T  40158747 gagcttatgtaattaagctgaaaacaacttataaacatgtcataagctgttttcataagttc 40158808  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 1801725 - 1801781
Alignment:
Q  221 ttataaacatttcataagctgttttcacaagttcttcaaaatagtatcacaagtgct 277  Q
    |||| ||||| |||||||||||||||| ||||||| | ||| | |||||||||||||    
T  1801725 ttatgaacatgtcataagctgttttcataagttctcccaaacaatatcacaagtgct 1801781  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 34958351 - 34958404
Alignment:
Q  221 ttataaacatttcataagctgttttcacaagttcttcaaaatagtatcacaagtg 275  Q
    |||||| ||||||||| |||||||||||||||||| | ||||||| |||||||||    
T  34958351 ttataaccatttcata-gctgttttcacaagttctcccaaatagtgtcacaagtg 34958404  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 34954116 - 34954188
Alignment:
Q  198 tatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttcttcaaaatagtatcaca 271  Q
    ||||||||||||||| ||| |  | || ||||| ||||| |||||||||||||||||||| ||||||| |||||    
T  34954116 tatgaaaataagctgaaaacagctcatgaacatgtcata-gctgttttcacaagttcttccaaatagtgtcaca 34954188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 38665305 - 38665272
Alignment:
Q  232 tcataagctgttttcacaagttcttcaaaatagt 265  Q
    |||||||||||||||||||||||| |||||||||    
T  38665305 tcataagctgttttcacaagttctccaaaatagt 38665272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 39602280 - 39602180
Alignment:
Q  164 tataagttgttttcatatgatatcattaggagcctatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttcttcaaaata 263  Q
    |||||| |||||||||| | |||| ||  || | |||||||||||| || ||| || |||| ||||| ||||||||||| |||| ||| ||||| |||||    
T  39602280 tataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataagctgtcttcataagctcttccaaata 39602181  T
Q  264 g 264  Q
    |    
T  39602180 g 39602180  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 42641647 - 42641598
Alignment:
Q  226 aacatttcataagctgttttcacaagttcttcaaaatagtatcacaagtg 275  Q
    ||||| ||||||| |||||||| |||||||| |||| |||||||||||||    
T  42641647 aacatgtcataaggtgttttcataagttcttgaaaacagtatcacaagtg 42641598  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 11376736 - 11376812
Alignment:
Q  197 ctatgaaaataagctggaaataaattataaacatttcataagctgttttcacaagttcttcaaaatagtatcacaag 273  Q
    |||||||||||||||| ||| ||  ||| ||||| ||| ||||| |||||| ||||||| | ||||||| |||||||    
T  11376736 ctatgaaaataagctgaaaacaagatattaacatgtcacaagctattttcataagttctcccaaatagtctcacaag 11376812  T

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