View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11529_low_1 (Length: 798)
Name: NF11529_low_1
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 120 - 562
Target Start/End: Complemental strand, 42076085 - 42075644
Alignment:
| Q |
120 |
tacttcataaaattaccttaatgagttaattgatgttgtgttatgttttaacaagctgttctannnnnnnngttggttgatttgattacaggcagatgtt |
219 |
Q |
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| T |
42076085 |
tacttcataaaattaccttaatgagttaattgatgttgtgttatgttttaacaagttgttct-ttttttttgttggttgatttgattacaggcagatgtt |
42075987 |
T |
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| Q |
220 |
tgtcatgcataccagttgttgataaaaggtggagtgaaagaagaaaacatagttgtgtttatgtatgatgatatagctaacaacgagttgaatcctaggc |
319 |
Q |
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| T |
42075986 |
tgtcatgcataccagttgttgataaaaggtggagtgaaagaagaaaacatagttgtgtttatgtatgatgatatagctaacaacgagttgaatcctaggc |
42075887 |
T |
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| Q |
320 |
ctggagttatcatcaaccatccacagggaccaaatgtttatgtcggcgttcctaaggtactttatgttttctgttggtaaagtgctatagtacgtactat |
419 |
Q |
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| T |
42075886 |
ctggagttatcatcaaccatccacagggacccaatgtttatgtcggcgttcctaaggtactttatgttttctgttggtaaagtgctatagtacgtactat |
42075787 |
T |
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| Q |
420 |
tttgtttcttgcaaatctctagccaannnnnnnngttcaaagaattttctagccaaattgatggtcgaatcgacattacaagtatggtcaaaatagtcat |
519 |
Q |
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| T |
42075786 |
tttgtttcttgcaaatctctaaccaattttttttgttcaaagaattttctagccaaattgatggtcgaatcgacattacaagtatggtcaaaatagtcat |
42075687 |
T |
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| Q |
520 |
tgttttgtgaattgacaaatagtacatagctgaacttgtcaac |
562 |
Q |
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| T |
42075686 |
tgttttgtgaattgacaaatagtacatagctgaacttgtcaac |
42075644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 679 - 781
Target Start/End: Complemental strand, 42075514 - 42075411
Alignment:
| Q |
679 |
tttctaatcccttttcttaagaaactatatactgtatgacaaaaatatata-attaatacccggtattatttagattcggaagggaaacttttgagaaaa |
777 |
Q |
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| T |
42075514 |
tttctaatcccttttcttaagaaactatatactgtatgacaaaaatatatatattaatacccggtattatttagattcggaagggaaacttttgagaaaa |
42075415 |
T |
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| Q |
778 |
agaa |
781 |
Q |
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|||| |
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| T |
42075414 |
agaa |
42075411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 661 - 693
Target Start/End: Complemental strand, 42075553 - 42075521
Alignment:
| Q |
661 |
ggtgaatttgtctagttctttctaatccctttt |
693 |
Q |
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| T |
42075553 |
ggtgaatttgtctagttctttctaatccctttt |
42075521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 208 - 293
Target Start/End: Original strand, 4493507 - 4493592
Alignment:
| Q |
208 |
caggcagatgtttgtcatgcataccagttgttgataaaaggtggagtgaaagaagaaaacatagttgtgtttatgtatgatgatat |
293 |
Q |
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| T |
4493507 |
caggctgatgtttgtcatgcgtatcaattgttgaggaaaggtggcttgaaagaagaaaacattattgttttcatgtatgatgatat |
4493592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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