View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11529_low_11 (Length: 340)
Name: NF11529_low_11
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 47292257 - 47291933
Alignment:
| Q |
1 |
gggctggaacatttcctggatcaacctatatcgtcccatataagaatataaatggagaagaaactttgaatgtaccaatttgtttgccctctgaagatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47292257 |
gggctggaacatttcctggatcaacctatatcgtcccatataagaatataaatggagaagaaactttgatgttaccaatttgtttgccctctgaagatat |
47292158 |
T |
|
| Q |
101 |
gaagaggtttgcaaaagagttggatgagatgcttggtaaccaaaattatcctacaccgagtgctcataattttgcgatgtctaccttatagtttgttgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292157 |
gaagaggtttgcaaaagagttggatgagatgcttggtaaccaaaattatcctacaccgagtgctcataattttgcgatgtctaccttatagtttgttgta |
47292058 |
T |
|
| Q |
201 |
gtttgtaatgtcgtgattcatgttaaataaagttgggggcttgtgtgctatataatgataatgaaaggcctattgtttgtgagatatattaactagtatc |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292057 |
gtttgtaatgtcgtgattcctgttaaataaagttgggggcttgtgtgctatataatgataatgaaaggcctattgtttgtgagatatattaactagtatc |
47291958 |
T |
|
| Q |
301 |
taggatttaatattataattctatc |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
47291957 |
taggatttaatattataattctatc |
47291933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 47298864 - 47298534
Alignment:
| Q |
1 |
gggctggaacatttcctggatcaacctatatcgtcccatataagaatataaatggagaagaaactttgaatgtaccaatttgtttgccctctgaagatat |
100 |
Q |
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|||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47298864 |
gggctggaccttttcctggagcaacctatatcgtcccatataagaatataaaaggagaagaaactttgatgttaccaatttgtttgccctctgaagatat |
47298765 |
T |
|
| Q |
101 |
gaagaggtttgcaaaagagttggatgagatgcttggtaaccaaaattatcctacaccgagtgctcataattttgcgatgtctaccttatagtttgttgta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||| |
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| T |
47298764 |
gaagaggtttgcaaaagagttggatgagatgcttggtaaccaaaatcatcctacattgagtgctcctagttttgcgatgtctaccttatagtttgttgta |
47298665 |
T |
|
| Q |
201 |
gtttgtaa--------tgtcgtgattcatgttaaataaagttgggggcttgtgtgctatataatgataatgaaaggcct-attgtttgtgagatatatta |
291 |
Q |
| |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||||| |
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| T |
47298664 |
gtttgtaaaattgtactgtcgtgattgctgttaaataaagttgggggcttgtgtgctatataatgataatgaaagacctgtttgttattgtgatatatta |
47298565 |
T |
|
| Q |
292 |
actagtatctaggatttaatattataattct |
322 |
Q |
| |
|
|||||||| |||| ||| ||||||||||||| |
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| T |
47298564 |
actagtatataggttttcatattataattct |
47298534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 47243159 - 47243241
Alignment:
| Q |
73 |
taccaatttgtttgccctctgaagatatgaagaggtttgcaaaagagttggatgagatgcttggtaaccaaaattatcctaca |
155 |
Q |
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|||||||||| |||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
47243159 |
taccaatttgcttgccccctgaagatatgaagaggtttgctaaagagttagatgatatgcttggtaaccaaaattatcctaca |
47243241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 47268002 - 47268143
Alignment:
| Q |
12 |
tttcctggatcaacctatatcgtcccatataagaatataaatggagaagaaactttgaatgtaccaatttgtttgccctctgaagatatgaagaggtttg |
111 |
Q |
| |
|
||||||||| || |||||||| ||||| |||||||| || | ||||||||| ||| | ||| | |||||||| ||| ||||| |||||||||||||| |
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| T |
47268002 |
tttcctggagcagcctatatcatcccacataagaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttg |
47268101 |
T |
|
| Q |
112 |
caaaagagttggatgagatgcttggtaaccaaaattatccta |
153 |
Q |
| |
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| |||||||| ||||||||||||||||| |||||||| |||| |
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| T |
47268102 |
ctaaagagttagatgagatgcttggtaaacaaaattaaccta |
47268143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 47257286 - 47257409
Alignment:
| Q |
73 |
taccaatttgtttgccctctgaagatatgaagaggtttgcaaaagagttggatgagatgcttggtaaccaaaattatcctacaccgagtgctcataattt |
172 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||| ||||| || || ||| |
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| T |
47257286 |
taccaatttgcttgcctcctgaagatatgaagaggtttgttaaggagttagatgatatgcttggtaaccaaaattatcctacaatgagtggtcctagttt |
47257385 |
T |
|
| Q |
173 |
tgcgatgtctaccttatagtttgt |
196 |
Q |
| |
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||||||||||||||||||| |
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| T |
47257386 |
catcttgtctaccttatagtttgt |
47257409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 47284043 - 47284150
Alignment:
| Q |
88 |
cctctgaagatatgaagaggtttgcaaaagagttggatgagatgcttggtaaccaaaattatcctacaccgagtgctcataattttgcgatgtctacctt |
187 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| ||| ||||| ||||||| |||||| | |||||| ||| || || || ||||| || |||||||| |
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| T |
47284043 |
cctctgaagttatgaagaggtttgctgaagagttagataagatgtttggtaatcaaaatcaacctacaacgattggtcctagttttgtcatctctacctt |
47284142 |
T |
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| Q |
188 |
atagtttg |
195 |
Q |
| |
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|||||||| |
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| T |
47284143 |
atagtttg |
47284150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 47279450 - 47279517
Alignment:
| Q |
88 |
cctctgaagatatgaagaggtttgcaaaagagttggatgagatgcttggtaaccaaaattatcctaca |
155 |
Q |
| |
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||||||||| ||||||||||||||| ||||||| ||| ||||| |||||||||||||| | |||||| |
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| T |
47279450 |
cctctgaagttatgaagaggtttgctgaagagttagataagatgtttggtaaccaaaatcaacctaca |
47279517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 196
Target Start/End: Original strand, 32731828 - 32731949
Alignment:
| Q |
75 |
ccaatttgtttgccctctgaagatatgaagaggtttgcaaaagagttggatgagatgcttggtaaccaaaattatcctacaccgagtgctcataattttg |
174 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| ||||||| ||||| || || ||| |
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| T |
32731828 |
ccaatttgcttgccccctgaagatatgaagaggtttgctaaagagttagatgatatgcttggtaaccaaaattgtcctacaatgagtggtcctagtttca |
32731927 |
T |
|
| Q |
175 |
cgatgtctaccttatagtttgt |
196 |
Q |
| |
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||||||||||||||||||| |
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| T |
32731928 |
tcttgtctaccttatagtttgt |
32731949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 20519835 - 20519904
Alignment:
| Q |
73 |
taccaatttgtttgccctctgaagatatgaagaggtttgcaaaagagttggatgagatgcttggtaacca |
142 |
Q |
| |
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||||||||| |||||| | ||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
20519835 |
taccaatttctttgccttatgaagatatgaagaggtttgctaaagagttagatgagatgcttggtaacca |
20519904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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