View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11529_low_21 (Length: 240)
Name: NF11529_low_21
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 31733544 - 31733741
Alignment:
| Q |
26 |
agatggagatcaataaaaagttgtgcatcaaatcaaatcatcaagagagattttgcggtaaccagttcagctttaagcttaatacaaattatagtgttgc |
125 |
Q |
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| T |
31733544 |
agatggagatcaataaaaagttgtgcatcaaatcaaatcatcaagagagattttgcggtaaccagttcagctttaagcttaatacaaattatagtgttgc |
31733643 |
T |
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| Q |
126 |
ctgattcatacacatgacaaacaatacgtggttgttggtgtcatttttgttatcttgtaatgatgacattaaaaccaatgtatgtcagtgaaacctac |
223 |
Q |
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| T |
31733644 |
ctgattcatacacatgacaaacaatatgtggatgttggtgtcatttttgttatcttgtaatgatgacattaaaaccaatgtatgtcagtgaaacctac |
31733741 |
T |
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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 218
Target Start/End: Complemental strand, 32848631 - 32848438
Alignment:
| Q |
26 |
agatggagatcaataaaaagttgtgcatcaaatcaaatcatcaagagagattttgcggtaaccagttcagctttaagcttaataca--------aattat |
117 |
Q |
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|||||||||||||||||||||||| |||||||||| || ||||||||||| ||| | |||| |||||||||||||||| || |||||| |
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| T |
32848631 |
agatggagatcaataaaaagttgtacatcaaatca-----tc--gagagattttgtggttaacagtccagctttaagcttaatccatgataatgaattat |
32848539 |
T |
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| Q |
118 |
agtgttgcctgattcatacacatgacaaacaatacgtggttgttggtgtcatttttgttatcttgtaatgatgacattaaaaccaatgtatgtcagtgaa |
217 |
Q |
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||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
32848538 |
agtgttgtctgattcatacacatgataaacattttatggttgttggtgtcatttttgttatcttgtaatgatgacattaaaaccaatgcatgtcggtgaa |
32848439 |
T |
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