View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11529_low_22 (Length: 235)
Name: NF11529_low_22
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8400663 - 8400887
Alignment:
| Q |
1 |
ttatcttcggcacttttattctcagcttctaccggtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaa |
100 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8400663 |
ttatcttcagcacttttattctcagcttctactggtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaa |
8400762 |
T |
|
| Q |
101 |
gattgttcaaacagcttaagtctcacatcgaaaccacaatagcaataggaaaccccacagaggaatatataaaggatactattcaagaagttctagctct |
200 |
Q |
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|||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8400763 |
gattgttcaaacagcttaagtcacagattgaaacaacaatagcaataggaaaccccacagaggaatatataaaggatactattcaagaagttctagctct |
8400862 |
T |
|
| Q |
201 |
tgatagagcttatccacttcctttg |
225 |
Q |
| |
|
|||||||||||||||||| |||||| |
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|
| T |
8400863 |
tgatagagcttatccactacctttg |
8400887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8368747 - 8368523
Alignment:
| Q |
1 |
ttatcttcggcacttttattctcagcttctaccggtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaa |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368747 |
ttatcttctgcacttttattctcagcttctactggtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaa |
8368648 |
T |
|
| Q |
101 |
gattgttcaaacagcttaagtctcacatcgaaaccacaatagcaataggaaaccccacagaggaatatataaaggatactattcaagaagttctagctct |
200 |
Q |
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||||||||||||||||||||||||| || ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368647 |
gattgttcaaacagcttaagtctcagattgaaactacaatagcaattggtaaccccacagaggaatatataaaggatactattcaagaagttctagctct |
8368548 |
T |
|
| Q |
201 |
tgatagagcttatccacttcctttg |
225 |
Q |
| |
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|||||||||||||||||| |||||| |
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| T |
8368547 |
tgatagagcttatccactacctttg |
8368523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8422240 - 8422464
Alignment:
| Q |
1 |
ttatcttcggcacttttattctcagcttctaccggtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422240 |
ttatcttccgcacttttattctcagcttctactggtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaa |
8422339 |
T |
|
| Q |
101 |
gattgttcaaacagcttaagtctcacatcgaaaccacaatagcaataggaaaccccacagaggaatatataaaggatactattcaagaagttctagctct |
200 |
Q |
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|
|||||||||||||||||||||| || || ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422340 |
gattgttcaaacagcttaagtcccagattgaaacaacaatagcaattgggaaccccacagaggaatatataaaggatactattcaagaagttctagctct |
8422439 |
T |
|
| Q |
201 |
tgatagagcttatccacttcctttg |
225 |
Q |
| |
|
|||||||||||||||||| |||||| |
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|
| T |
8422440 |
tgatagagcttatccactacctttg |
8422464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 8375568 - 8375634
Alignment:
| Q |
44 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||| | || ||||| ||||||||||| |||||||||||||| |
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| T |
8375568 |
ttatcatgaacaaaatccaaccttctcaattggccgaggaacaaagaaatgctacaagattgttcaa |
8375634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 8395253 - 8395323
Alignment:
| Q |
43 |
attatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaaaca |
113 |
Q |
| |
|
||||||||||||||||||||||| || ||||| | ||||| ||||||||||| ||||||||||||||||| |
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|
| T |
8395253 |
attatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaaaca |
8395323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 8439535 - 8439469
Alignment:
| Q |
44 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||| | || ||||| ||||||||||| |||||||||||||| |
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|
| T |
8439535 |
ttatcatgaacaaaatccaaccttctcaattggccgaggaacaaagaaatgctacaagattgttcaa |
8439469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 8406318 - 8406249
Alignment:
| Q |
44 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaaaca |
113 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | ||||| ||||||||||| ||||||||||||||||| |
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|
| T |
8406318 |
ttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaaaca |
8406249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 8412438 - 8412372
Alignment:
| Q |
44 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa |
110 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | ||||| ||||||||||| |||||||||||||| |
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|
| T |
8412438 |
ttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaa |
8412372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 8434536 - 8434470
Alignment:
| Q |
44 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa |
110 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | ||||| ||||||||||| |||||||||||||| |
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|
| T |
8434536 |
ttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaa |
8434470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 8417653 - 8417587
Alignment:
| Q |
44 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||| | || ||||||||| |||| | |||||||||||||| |
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|
| T |
8417653 |
ttatcatgaacaaaatccaaccttctcaattggccgaggagcaatgaaacactacaagattgttcaa |
8417587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 8431466 - 8431400
Alignment:
| Q |
44 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa |
110 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | || || ||||| ||||| |||||||||||||| |
|
|
| T |
8431466 |
ttatcatgaacaaaatccaaccctctcaactcacagaagaacaaaggaatgccacaagattgttcaa |
8431400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 8404372 - 8404344
Alignment:
| Q |
49 |
atgaacaaaatccaaccttcacaacttgc |
77 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
8404372 |
atgaacaaaatccaaccttcacaacttgc |
8404344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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