View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11529_low_23 (Length: 227)
Name: NF11529_low_23
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 50463025 - 50463251
Alignment:
| Q |
1 |
cactataacttaatattcattaaattttctttcaatctacaaaatgtacaacaacaaaaaaggttaaaactagctacatctaattaatactaagaagctg |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50463025 |
cactataacttaattttcattaaattttctttcaatctacaaaatgtacaacaacaaaaaaggttaaaactagctacatctaattaatactaagaagctg |
50463124 |
T |
|
| Q |
101 |
ttac---nnnnnnnnnnnnnnnnncttcaatctcagtaatctcactctgtccctcacatagatacaaaggtgaagaagaggcaaaagaagaaacagc--- |
194 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50463125 |
ttacattattattattattattatcttcaatctcagtaatctcactctgtccctcacatagatacaaaggtgaagaagaggcaaaagaagaaacagcaga |
50463224 |
T |
|
| Q |
195 |
agaatataaagttaaattagaacaaga |
221 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
50463225 |
agaatataaagttaaattagaacaaga |
50463251 |
T |
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