View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11529_low_3 (Length: 728)
Name: NF11529_low_3
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 11612930 - 11612646
Alignment:
| Q |
1 |
aaaggaccttaagactaaaaggcaaaccaaacatgcagaagaaactagatcaatggaaataatttacaaaatcaattagagtgaggacaaaagcagaagc |
100 |
Q |
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| T |
11612930 |
aaaggaccttaagactaaaaggcaaaccaaacatgcagaagaaactagatcaatggaaatactttacaaaatcaattagagtgaggacaaaagcagaagc |
11612831 |
T |
|
| Q |
101 |
tagattacatcataccaaactatatagaaacatgaaaattaaaaaaggcttcatgttgaagataaagaccagctgaactgtaacaggtccactctcacag |
200 |
Q |
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| T |
11612830 |
tagattacatcataccaaactatatagaaacatgaaaattaaaaaaggcttcatgttgaagataaagaccagctgaactgtaacaggtccactctcacag |
11612731 |
T |
|
| Q |
201 |
tcataccaaccaaccataacaaaatctttaacattaagcaatttctaagataacccttgtaagcttatcctttgataaatacact |
285 |
Q |
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| T |
11612730 |
tcacaccaaccaaccataacaaaatctttaacattaagcaatttctaatgtaacccttttaagcttatcctttgataaatacact |
11612646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 411 - 551
Target Start/End: Complemental strand, 11612520 - 11612380
Alignment:
| Q |
411 |
ggtaagaactttggtgaattaagtgaaaagcagtaaaagatatttcacacctcaaagcatagtaaagcataagaaataaagagatagtgctatgaatcaa |
510 |
Q |
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| T |
11612520 |
ggtaagaactttggtgaattaagtgaaaagcagtaaaagatatttcacacctcaaagcatagtaaagcataagaaataaagagatagtgctatgaatcaa |
11612421 |
T |
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| Q |
511 |
tagggacacatgaaaaaagagaagagagtactaacatatga |
551 |
Q |
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| T |
11612420 |
tagtgacacatgaaaaaagagaagagagtactaacatatga |
11612380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 578 - 709
Target Start/End: Original strand, 9571002 - 9571139
Alignment:
| Q |
578 |
gtaagtaagtaactgtataggctgtatcaagagtctgctagaaaacgatggattggt------ggtaatctgtgagcgttgatgtgattatatataatgt |
671 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
9571002 |
gtaagtaagtaactgtataggctgtatcaagagtctgctagaaaacgatggattggtggtggtggtaatctgtgagcgttgatgtgattatatataattt |
9571101 |
T |
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| Q |
672 |
acatttactttattataatataaaatataaatcatatt |
709 |
Q |
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| T |
9571102 |
acatttactttattataatataaaatataaatcatatt |
9571139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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