View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11529_low_5 (Length: 565)
Name: NF11529_low_5
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 12 - 550
Target Start/End: Original strand, 34680975 - 34681513
Alignment:
| Q |
12 |
atagggacttggattccatgaatgaattcatataatttaaaagtgactgcaagagtaattttatccctaaaaaatgtggnnnnnnncctaaatatcaaaa |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34680975 |
atagggacttggattccatgaatgaattcatataatttaaaagtgactgcaagagtaattttatccctaaaaaatgtgaaaaaaaacctaaatatcaaag |
34681074 |
T |
|
| Q |
112 |
ttttattttatcgttaactatttgatcttttttaatggtttaaccatatctgtttgattgtgtgaatttaagattccaatcaagtagggattcctaaatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34681075 |
ttttattttatcgttaactatttgatcttttttaatggtttaaccatatctgtttgattgtgtgaatttaagattccaatcaagtacggattcctaaatt |
34681174 |
T |
|
| Q |
212 |
cacacatttaagcaatataggcaattaaaaaataacatagttattatagaagtatcgtaatactccatagtttgtacaatataatgaacatctttcagtg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34681175 |
cacacatttaagcaatataggcaattaaaaaataacatagttattatagaagtatcgtaatactccatagtttgtacaatataatgaacatctttcagtg |
34681274 |
T |
|
| Q |
312 |
aattctataattggtgaacattgcatgagagaactccaaaaccaaagcctagatggaacccaaagcttgagcaagtagtgttgtaggctaaatatggttt |
411 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34681275 |
aattttataattggtgaacattgcatgagagaactccaaaaccaaagcctagatggaacccaaagcttgagcaagtagtgttgtaggctaaatatggttt |
34681374 |
T |
|
| Q |
412 |
ggaggcaattccttaatagagtacccactaaggataatctaagccttagaggtgtgaggttgaattcatcgttatactgtgttggcggttgcggtaggct |
511 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34681375 |
ggaggcaattccttaatagattacccactaagtataatctaagccttagaggtgtgaggttgaattcatctttatactgtgttggcggttgcggtaggct |
34681474 |
T |
|
| Q |
512 |
tgagactgtgaaccatatccttttcaattgtgctgtttt |
550 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||||| |
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| T |
34681475 |
tgagactgtgaaccatatcctttttaatcgtgctgtttt |
34681513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 338
Target Start/End: Original strand, 34694287 - 34694370
Alignment:
| Q |
255 |
ttatagaagtatcgtaatactccatagtttgtacaatataatgaacatctttcagtgaattctataattggtgaacattgcatg |
338 |
Q |
| |
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|||||||| |||| ||||||||||| ||| |||||| ||||||| ||||||| || |||| ||||||| || ||| ||||||| |
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| T |
34694287 |
ttatagaaatatcataatactccatggttcatacaatgtaatgaatatctttcggtcaattttataatttgtaaactttgcatg |
34694370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 34686241 - 34686341
Alignment:
| Q |
127 |
aactatttgatcttttttaatggtttaaccatatctgtttgattgtgtgaatttaagattccaat-caagtagggattcctaaattcacacatttaagca |
225 |
Q |
| |
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|||||||||||||||| ||||||| | ||||||| || | || ||| |||||| |||| |||| |||||| | |||||||||||||||||| ||||| |
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| T |
34686241 |
aactatttgatcttttctaatggtctgaccatatttgctcgacaatgtaaatttaggatttcaatgcaagtaagatttcctaaattcacacattcaagca |
34686340 |
T |
|
| Q |
226 |
a |
226 |
Q |
| |
|
| |
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|
| T |
34686341 |
a |
34686341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 406 - 550
Target Start/End: Original strand, 10831046 - 10831190
Alignment:
| Q |
406 |
tggtttggaggcaattccttaatagagtacccactaaggataatctaagccttagaggtgtgaggttgaattcatcgttatactgtgttggcggttgcgg |
505 |
Q |
| |
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|||| ||||||| ||||||||||||| || ||| ||| |||||||||||| |||||||||||||||||||||||| ||| || | |||||| || ||||| |
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| T |
10831046 |
tggtctggaggctattccttaatagattagccaataaagataatctaagctttagaggtgtgaggttgaattcattgttgtattatgttggtggctgcgg |
10831145 |
T |
|
| Q |
506 |
taggcttgagactgtgaaccatatccttttcaattgtgctgtttt |
550 |
Q |
| |
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|||||| ||||||||||||| || |||| ||||||||| |||| |
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| T |
10831146 |
taggctcgagactgtgaaccgcgtcttttttaattgtgctatttt |
10831190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 444 - 542
Target Start/End: Original strand, 40754567 - 40754665
Alignment:
| Q |
444 |
gataatctaagccttagaggtgtgaggttgaattcatcgttatactgtgttggcggttgcggtaggcttgagactgtgaaccatatccttttcaattgt |
542 |
Q |
| |
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|||||||| | || ||||||||||||| |||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
40754567 |
gataatcttaaccgtagaggtgtgaggctgaattaatcgttatattgtgttggaggttgcggtaggcttgagactgtgaaccatatattttttaattgt |
40754665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 421 - 481
Target Start/End: Complemental strand, 33599042 - 33598982
Alignment:
| Q |
421 |
tccttaatagagtacccactaaggataatctaagccttagaggtgtgaggttgaattcatc |
481 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
33599042 |
tccttaatagattacccactaaggataatctaagccttagagatgtgaggttgaattcatc |
33598982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 408 - 524
Target Start/End: Original strand, 34275856 - 34275972
Alignment:
| Q |
408 |
gtttggaggcaattccttaatagagtacccactaaggataatctaagccttagaggtgtgaggttgaattcatcgttatactgtgttggcggttgcggta |
507 |
Q |
| |
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|||| ||||| | ||||||||||| | ||| ||||||||||||| ||| | ||||||||||||||||| || |||||| |||||||| | ||| |||| |
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| T |
34275856 |
gtttagaggctactccttaatagattgtccatcaaggataatctaaacctaaaaggtgtgaggttgaatttattgttatattgtgttggtgtttgtggta |
34275955 |
T |
|
| Q |
508 |
ggcttgagactgtgaac |
524 |
Q |
| |
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||||||||| ||||||| |
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| T |
34275956 |
ggcttgagattgtgaac |
34275972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 8284213 - 8284262
Alignment:
| Q |
255 |
ttatagaagtatcgtaatactccatagtttgtacaatataatgaacatct |
304 |
Q |
| |
|
|||||||| |||| ||||||||| |||||| ||||||||||||||||||| |
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|
| T |
8284213 |
ttatagaaatatcataatactccctagtttatacaatataatgaacatct |
8284262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 8284341 - 8284378
Alignment:
| Q |
338 |
gagagaactccaaaaccaaagcctagatggaacccaaa |
375 |
Q |
| |
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|||||||||||| |||||||||| |||||||||||||| |
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|
| T |
8284341 |
gagagaactccagaaccaaagccaagatggaacccaaa |
8284378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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