View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11529_low_6 (Length: 550)
Name: NF11529_low_6
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Complemental strand, 6199239 - 6198683
Alignment:
| Q |
19 |
attaacacaaatgcaaaacatcacaaacttttctgatgaaatacaactaactaactatggttacttgattaacaagtaaatctatgatcaagttagtttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6199239 |
attaacacaaatgcaaaacatcacaaacttttctgatgaaatgcaactaagtaactatggttacttgattaacaagtaaatctatgatcaagttagtttg |
6199140 |
T |
|
| Q |
119 |
taactaactccatcttatccactaactacctactaatctatattatatacatcataacaaatgaataatagactaatg-accaacacatcttctctaacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6199139 |
taactaactccatcttatccactaactacctactaatctatattatatacatcataacaaatgaataatagactaatgaaccaacacatcttctctaacg |
6199040 |
T |
|
| Q |
218 |
atcctttaggggtgatcctctgaacccctataatgatccacaatacccctaatcatctaaaca----------gacaactattataaattatttcaattc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6199039 |
atcctttaggggtgatcctctgaacccctatgatgatccacaatacccctaatcatctaaacacaatcttttggacaactattataaattatttcaattc |
6198940 |
T |
|
| Q |
308 |
caaagattttgttaagtatagtgttgttgaacacaaacatttagattaactagcttttggatactatatctgatttcgataattatgtatatcattgtaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6198939 |
caaagattttgttaagtatagtgttgttgaacacaaacatttagattaactagcttttggatactatatctgatttcgataattatgtatatcattgtaa |
6198840 |
T |
|
| Q |
408 |
acattcggttcctctagtatctta-----------------ttggccttcaccgtcctggtcactggtgccattgactttttcaatacccaaatgttaat |
490 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6198839 |
acattcggttcctctagtaacttattaatggtagtgctttgttggccttcatcgtcctggtcactggtgccgttgactttttcaatacccaaatgttaat |
6198740 |
T |
|
| Q |
491 |
aattttgaagagctatggtgacaacaccatggacatttcaactgcctttgcttctcc |
547 |
Q |
| |
|
||||||||||| | |||||||||||| |||||||||||||||||| ||| |||||| |
|
|
| T |
6198739 |
tattttgaagagatgtggtgacaacactatggacatttcaactgccattgtttctcc |
6198683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 12243708 - 12243641
Alignment:
| Q |
70 |
taactatggttacttgattaacaagtaaat-ctatgatcaagttagtttgtaactaactccatcttatc |
137 |
Q |
| |
|
|||| |||||||||||| |||||||||||| ||||||||||||||| || |||||||| || ||||||| |
|
|
| T |
12243708 |
taaccatggttacttgactaacaagtaaatcctatgatcaagttag-ttataactaacaccgtcttatc |
12243641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 432 - 546
Target Start/End: Complemental strand, 22450791 - 22450675
Alignment:
| Q |
432 |
ttggccttcaccgtcctggtcactggtgccat--tgactttttcaatacccaaatgttaataattttgaagagctatggtgacaacaccatggacatttc |
529 |
Q |
| |
|
||||||||||| ||||| || || ||||||| || ||||||||| |||||||||||||| ||||||||||| | |||||||||||||||| | |||| |
|
|
| T |
22450791 |
ttggccttcactgtccttgttaccggtgccacactggctttttcaacacccaaatgttaatcattttgaagagttgtggtgacaacaccatgtccgtttc |
22450692 |
T |
|
| Q |
530 |
aactgcctttgcttctc |
546 |
Q |
| |
|
||||||| ||| ||||| |
|
|
| T |
22450691 |
aactgccattgtttctc |
22450675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 28428311 - 28428423
Alignment:
| Q |
68 |
actaactatggttacttgattaacaagtaaatc-tatgatcaagttagtttgtaactaactccatcttat-ccactaactacctactaatctatattata |
165 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||| | ||||||||||||||| | |||| |||| |||||||| | ||||||||| |||||| | || |||| |
|
|
| T |
28428311 |
actaactagggttacatgactaacaagtaaaccctatgatcaagttagtctctaacgaacttcatcttatacaactaactactaactaatttgtagtata |
28428410 |
T |
|
| Q |
166 |
tacatcataacaa |
178 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28428411 |
tacatcataacaa |
28428423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 23398014 - 23398125
Alignment:
| Q |
23 |
acacaaatgcaaaacatcacaaacttttctgatgaaatacaac----taactaactatggttacttgattaacaagtaaa-tctatgatcaagttagttt |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||| | || || ||| ||||||| ||||||||||||| ||||||||||| ||||||||||||| ||| | |
|
|
| T |
23398014 |
acacaaatgcaaaacataccaaacttttctaacaaactataactaattaactaattatggttacttgactaacaagtaaactctatgatcaagtaagtct |
23398113 |
T |
|
| Q |
118 |
gtaactaactcc |
129 |
Q |
| |
|
||||||||||| |
|
|
| T |
23398114 |
ctaactaactcc |
23398125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 23398152 - 23398255
Alignment:
| Q |
74 |
tatggttacttgattaacaagtaaatc-tatgatcaagttagtttgtaactaactccatcttatcca-ctaactacctactaatctatattatatacatc |
171 |
Q |
| |
|
||||||| ||||| ||||||||||| | ||||||| ||| ||| | ||||||| ||||||||| ||| |||||||| |||||| |||| |||||||||| |
|
|
| T |
23398152 |
tatggtttcttgactaacaagtaaaccctatgatctagtaagtctctaactaattccatcttaaccaactaactactcactaatttatagtatatacatc |
23398251 |
T |
|
| Q |
172 |
ataa |
175 |
Q |
| |
|
|||| |
|
|
| T |
23398252 |
ataa |
23398255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 40154682 - 40154572
Alignment:
| Q |
67 |
aactaactatggttacttgattaacaagtaaatc-tatgatcaagttagtttgtaactaactccatcttatcc-actaactacctactaatctatattat |
164 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||| ||| ||||||||| | | ||||||||||||| |||||| ||||||||| | | || |||| ||| |
|
|
| T |
40154682 |
aactaattatggttacttaactaacaagtaaatcatataatcaagttaatctctaactaactccatattatccaactaactactaattgatatatagtat |
40154583 |
T |
|
| Q |
165 |
atacatcataa |
175 |
Q |
| |
|
||||||||||| |
|
|
| T |
40154582 |
atacatcataa |
40154572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 34015970 - 34015922
Alignment:
| Q |
66 |
taactaactatggttacttgattaacaagtaaa-tctatgatcaagtta |
113 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
34015970 |
taactaactatggttacttgactgacaagtaaactctatgatcaagtta |
34015922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 38163179 - 38163116
Alignment:
| Q |
65 |
ctaactaactatggttacttgattaacaagtaaa-tctatgatcaagttagtttgtaactaact |
127 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| |||||||||||||| ||| ||| ||||| |
|
|
| T |
38163179 |
ctaactaactatggttacttgactaccaagtaaaccctatgatcaagttaatttctaattaact |
38163116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University