View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11529_low_8 (Length: 511)
Name: NF11529_low_8
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Original strand, 41556000 - 41556459
Alignment:
| Q |
19 |
acattagtacacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaa-caaatctcaaatccactccatgtg |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
41556000 |
acattagtacacaccaaatcttctgaatttagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatctcaaatccactccttgtg |
41556099 |
T |
|
| Q |
118 |
actcaagaaacaaaatcaacaaactttctttgttataatttgttgtaaatggtcgatggacaaaagagttgttggtccacaccatgaacatagtgagagt |
217 |
Q |
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| T |
41556100 |
actcaagaaacaaaattaacaaactttctttgttataatttgttgtaaatggtcgatggacaaaagagttgttggtccacaccatgaacatagtgagagt |
41556199 |
T |
|
| Q |
218 |
gaattctcttcc---------actattcttggttttataaacaaatttctcatggaagatgatgacatagaggaagactacaatatgttccaacatcatg |
308 |
Q |
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| T |
41556200 |
gaattctcttccactatttccactattcttggttttataaacaaatttctcatggaagatgatgacatagaggaagactacaatatgttccaacatcatg |
41556299 |
T |
|
| Q |
309 |
aacatgaggagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41556300 |
aacatgaggagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctct |
41556399 |
T |
|
| Q |
409 |
tcaacttactgagaaatcatttcatgatgttattgttcacactcctcctgctgctgctgg |
468 |
Q |
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| T |
41556400 |
tcaactcactgagaaatcatttcatgatgttattgttcacactcctcctgctgctgctgg |
41556459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 455
Target Start/End: Original strand, 41569689 - 41570143
Alignment:
| Q |
19 |
acattagtacacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaa-caaatc-----------------t |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
41569689 |
acattagtacacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatcaacaatattcttttacat |
41569788 |
T |
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| Q |
101 |
caaatccactccatgtgactcaagaaacaaaatcaacaaac-----tttctt--tgttataatttgttgtaaatggtcgatggacaaaagagttgttggt |
193 |
Q |
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| T |
41569789 |
caaatccattcattgtcacaccagaaacaaaattaacaaacaaattttccttcttgttataatttgttgtaaatgg-------acaaaagaattgttgat |
41569881 |
T |
|
| Q |
194 |
ccacaccatgaacatagtgagagtgaattctcttccactattcttggttttataaacaaatttctcatggaagatgatgacatagaggaagactacaata |
293 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41569882 |
tcacaccatgaacaaagtgagagtgaattctcttcccctattcttggttatgtaagcaaatttctcatggaagatgatgacatagaggaagactacaata |
41569981 |
T |
|
| Q |
294 |
tgttccaacatcatgaacatgaggagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagaatacactatgttcca |
393 |
Q |
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|||||||||| |||||||||| | |||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41569982 |
tgttccaacacaatgaacatgatgggtcttccaatgctcttggttatataaaccgatttctcatggaagaagactttgaaaaagaatacactatgttcca |
41570081 |
T |
|
| Q |
394 |
agattcttttgctcttcaacttactgagaaatcatttcatgatgttattgttcacactcctc |
455 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41570082 |
agattcctttgctcttcaacttactgagaaatcatttcatgatgttattgttcacactcctc |
41570143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 172 - 455
Target Start/End: Original strand, 41588805 - 41589088
Alignment:
| Q |
172 |
gatggacaaaagagttgttggtccacaccatgaacatagtgagagtgaattctcttccactattcttggttttataaacaaatttctcatggaagatgat |
271 |
Q |
| |
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|||||||||| ||||||||| ||||| ||||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41588805 |
gatggacaaaggagttgttgatccactccatgaacaaagtaagagtgaattcacttccactgttcttggttttataaacaaatttctcatggaagatgat |
41588904 |
T |
|
| Q |
272 |
gacatagaggaagactacaatatgttccaacatcatgaacatgaggagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttg |
371 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41588905 |
gactcagaggaagactacaatatgttccaacatcatgaacatgaagtgtcttccactgttcttggttctataaaccaatttctcatggaagaagactttg |
41589004 |
T |
|
| Q |
372 |
aaaaagaatacactatgttccaagattcttttgctcttcaacttactgagaaatcatttcatgatgttattgttcacactcctc |
455 |
Q |
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| T |
41589005 |
aaaaagagtacactcagttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcacactcctc |
41589088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 352 - 455
Target Start/End: Original strand, 41579046 - 41579149
Alignment:
| Q |
352 |
tctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctcttcaacttactgagaaatcatttcatgatgttattgttcacact |
451 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41579046 |
tctcatggaagaagactttgaaaaggagtacactatgttccaagattcttttactcttcaacttactgaaaaatcatttcatgatgttattgttcacact |
41579145 |
T |
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| Q |
452 |
cctc |
455 |
Q |
| |
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|||| |
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|
| T |
41579146 |
cctc |
41579149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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