View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11529_low_9 (Length: 420)
Name: NF11529_low_9
Description: NF11529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11529_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 406
Target Start/End: Complemental strand, 35288732 - 35288340
Alignment:
| Q |
14 |
tgaaaccaaaaataaataaatcagcttcgaggccatagagaagggactaacagtttgatagtcgaggccctgattctcgtcgggagagtaatcatctgag |
113 |
Q |
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| T |
35288732 |
tgaaagcaaaaataaataaatcagcttcgaggccatagagaagggactaacagtttgatagtcgaggccctgattctcgtcgggagagtaatcatctgag |
35288633 |
T |
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| Q |
114 |
cctatatcaacaaacttgatggtgccataactcgtgttcctctctcgtagcatattcacctaaaatgacaaataacaacaaagagcaaaaaactctatca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35288632 |
cctatatcaacaaacttgatggtgccataactcgtgttcctctctcgtagcatattcacctaaaatgacaaataacaacaaagagcaaaagactctatca |
35288533 |
T |
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| Q |
214 |
atgaatgagatgaaacaaggttcactaactaactatataacatgagaattatgtggttatgaacaaaacaaccacacttgttaattgttattgaaacaaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35288532 |
atgaatgagatgaaacaaggttcactaactaactatataacatgagaattatgtggttatgaacaaaacaaccacacttgttaattgttattgaaacaaa |
35288433 |
T |
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| Q |
314 |
gattaacctctcgcatgcataatggacaatctccatcatatagcattttaatcttccaatctttaggagactgttctccctcctcttctttct |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35288432 |
gattaacctctcgcatgcataatggacaatctccatcatatagcattttaatcttccaatctttaggagactgttctccctcctcttctttct |
35288340 |
T |
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