View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11530_high_13 (Length: 404)

Name: NF11530_high_13
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11530_high_13
NF11530_high_13
[»] chr1 (6 HSPs)
chr1 (19-393)||(46766282-46766659)
chr1 (128-207)||(4868430-4868511)
chr1 (157-212)||(29045902-29045957)
chr1 (127-224)||(32515398-32515498)
chr1 (157-224)||(4549531-4549599)
chr1 (157-221)||(30259476-30259540)
[»] chr3 (3 HSPs)
chr3 (127-234)||(37273137-37273247)
chr3 (157-233)||(21574494-21574570)
chr3 (156-223)||(36200110-36200177)
[»] chr2 (4 HSPs)
chr2 (157-229)||(34652026-34652098)
chr2 (158-233)||(1939323-1939398)
chr2 (177-221)||(16867755-16867799)
chr2 (157-221)||(41809235-41809299)
[»] chr7 (3 HSPs)
chr7 (157-239)||(33645951-33646032)
chr7 (157-210)||(12234879-12234932)
chr7 (178-234)||(25596036-25596092)
[»] chr6 (7 HSPs)
chr6 (130-212)||(2460111-2460196)
chr6 (160-224)||(281841-281905)
chr6 (157-213)||(7785734-7785790)
chr6 (157-211)||(9667975-9668029)
chr6 (157-239)||(28088213-28088294)
chr6 (157-202)||(1019600-1019645)
chr6 (157-209)||(30523965-30524017)
[»] chr4 (5 HSPs)
chr4 (130-212)||(27123312-27123397)
chr4 (127-224)||(2996586-2996686)
chr4 (161-202)||(55547038-55547079)
chr4 (157-229)||(2592299-2592371)
chr4 (192-228)||(14011243-14011279)
[»] chr5 (5 HSPs)
chr5 (157-239)||(5531033-5531114)
chr5 (157-216)||(4273367-4273426)
chr5 (157-224)||(10272421-10272488)
chr5 (161-211)||(29590623-29590673)
chr5 (177-221)||(33533549-33533593)
[»] scaffold0153 (2 HSPs)
scaffold0153 (157-224)||(6484-6551)
scaffold0153 (157-224)||(13504-13571)
[»] chr8 (3 HSPs)
chr8 (157-223)||(43504765-43504831)
chr8 (158-210)||(8806759-8806811)
chr8 (163-211)||(12361218-12361266)


Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 46766282 - 46766659
Alignment:
Q  19 attgcatcatgcaatgaatacatacagcctaaagaatatacctatatgatctttgacattagtctgcttgtatttacttaaccgagcttatctattgtta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46766282 attgcatcatgcaatgaatacatacagcctaaagaatatacctatatgatctttgacattagtctgcttgtatttacttaaccgagcttatctattgtta 46766381  T
Q  119 tca---ggctcagcacttgtgagactgcttgcgagagttataaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaaga 215  Q
    |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46766382 tcatcaggctcagcacttgtgagactgcttgcgagagttataaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaaga 46766481  T
Q  216 ttgcttatgtaaaaagtttctagcgtatgcataagcacttatgccagaagcgctcaattaatttgaaaggcaacataaacaaactatttttacagtatag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46766482 ttgcttatgtaaaaagtttctagcgtatgcataagcacttatgccagaagcgctcaattaatttgaaaggcaacataaacaaactatttttacagtatag 46766581  T
Q  316 tctgaaaagtcaatatctcattctcttatacattgaaagtccttttgttcttttcttattgtcattagaattattctt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46766582 tctgaaaagtcaatatctcattctcttatacattgaaagtccttttgttcttttcttattgtcattagaattattctt 46766659  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 4868511 - 4868430
Alignment:
Q  128 gcacttgtgagactgcttgcgagagtt-at-aaacaacttatgacttgtctataagttgcttttaacttatttccattagct 207  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||| |||| |||||||| ||| ||||||||| ||| ||||    
T  4868511 gcacttgtgagactgtttgagagagtttatgaaacaacttatgacatgtcaataagttgttttcaacttatttacataagct 4868430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 29045902 - 29045957
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctcca 212  Q
    |||||||||||||| |||| |||||||||||||||| || |||||| | |||||||    
T  29045902 aaacaacttatgacatgtccataagttgcttttaacgtacttccatcatctctcca 29045957  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 32515398 - 32515498
Alignment:
Q  127 agcacttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 223  Q
    |||||||||||||||| ||| ||||| ||||  ||||| | |||||| |||| |||||||| ||| ||||||| || || ||||||||| ||| ||||||    
T  32515398 agcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatctataagctctccatgatagcttat 32515497  T
Q  224 g 224  Q
    |    
T  32515498 g 32515498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 4549531 - 4549599
Alignment:
Q  157 aaacaacttatgacttgtctat-aagttgcttttaacttatttccattagctctccaagattgcttatg 224  Q
    |||||||||||||| ||||||| |||||| ||| |||  ||||| || ||||||||| |||||||||||    
T  4549531 aaacaacttatgacatgtctataaagttgttttcaacaaatttcaataagctctccaggattgcttatg 4549599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 30259476 - 30259540
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgctt 221  Q
    |||||||||| ||| |||| |||| ||| ||| ||||||||||||| ||||||||| ||| ||||    
T  30259476 aaacaacttacgacatgtcaataaattgttttcaacttatttccataagctctccatgatagctt 30259540  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 37273247 - 37273137
Alignment:
Q  127 agcacttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 223  Q
    |||||| ||||||||| ||| ||||| ||||  |||||||||||||| |||| |||||||| ||| ||||||||||||| || |||||||||| ||||||    
T  37273247 agcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttat 37273148  T
Q  224 gtaaaaagttt 234  Q
    | ||| |||||    
T  37273147 gaaaacagttt 37273137  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 21574570 - 21574494
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtt 233  Q
    |||||||||||||| |||  ||||| |||||||| ||||||||||| ||||||||| | | ||||||  ||||||||    
T  21574570 aaacaacttatgacatgttcataagctgcttttagcttatttccataagctctccatgttagcttataaaaaaagtt 21574494  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 36200177 - 36200110
Alignment:
Q  156 taaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 223  Q
    ||||||||||||||| |||| |||||||| ||| | ||||||||||| |||||| || ||| ||||||    
T  36200177 taaacaacttatgacatgtccataagttgttttcagcttatttccatgagctctacaggatagcttat 36200110  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 34652026 - 34652098
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaa 229  Q
    |||||||||||||| |||| ||||| || ||| ||||||||||||| ||||||||||||| ||||||| ||||    
T  34652026 aaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaaa 34652098  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 1939323 - 1939398
Alignment:
Q  158 aacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtt 233  Q
    ||||||||||||| |||| ||||| || ||| ||||||||||||| |||||||||  || ||||||| ||| ||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaacagtt 1939398  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 16867799 - 16867755
Alignment:
Q  177 ataagttgcttttaacttatttccattagctctccaagattgctt 221  Q
    |||||||| ||| ||||||||||||| ||||||||||||| ||||    
T  16867799 ataagttgttttcaacttatttccataagctctccaagatagctt 16867755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 41809235 - 41809299
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgctt 221  Q
    |||||||||||||| |||  |||||||| ||||| ||||||||||| |||| || ||||| ||||    
T  41809235 aaacaacttatgacatgttcataagttgtttttagcttatttccataagctttctaagatagctt 41809299  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 33645951 - 33646032
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtttctagc 239  Q
    |||||||||||||| ||||||||||||| |||||  |||||||||| |||||||| |||| ||||||| ||| ||||| ||||    
T  33645951 aaacaacttatgacatgtctataagttgtttttaggttatttccataagctctcc-agatagcttatgaaaacagtttatagc 33646032  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 12234879 - 12234932
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctc 210  Q
    |||||||||||||| |||||||||| || ||| | ||||||||||| |||||||    
T  12234879 aaacaacttatgacatgtctataagctgttttcagcttatttccataagctctc 12234932  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 25596092 - 25596036
Alignment:
Q  178 taagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagttt 234  Q
    ||||||| ||| ||||||||| ||| ||||||||||||| ||||||| ||| |||||    
T  25596092 taagttgttttcaacttattttcataagctctccaagatagcttatgaaaagagttt 25596036  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 2460111 - 2460196
Alignment:
Q  130 acttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctcca 212  Q
    ||||||||||||| ||| ||||| ||||  |||||||||||||| ||||| ||||||| ||| ||||||||||||| |||||||||    
T  2460111 acttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctcca 2460196  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 281841 - 281905
Alignment:
Q  160 caacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatg 224  Q
    ||||||||||| ||||||||||||| ||| | ||||||||||| ||||||| | ||| |||||||    
T  281841 caacttatgacatgtctataagttgttttcagcttatttccatgagctctctaggatagcttatg 281905  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 7785734 - 7785790
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaa 213  Q
    ||||| |||||||| ||||||||||||| ||| | ||||||||||| ||||||||||    
T  7785734 aaacagcttatgacatgtctataagttgttttcagcttatttccataagctctccaa 7785790  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 9667975 - 9668029
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctcc 211  Q
    |||||||||||||| |||| ||||| || ||| ||||||||||||| ||||||||    
T  9667975 aaacaacttatgacatgtccataagctgttttcaacttatttccataagctctcc 9668029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 28088213 - 28088294
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtttctagc 239  Q
    ||||||||||| || |||||||| |||| ||| | ||||||||||| ||||||||| ||| ||||||| ||| ||||| ||||    
T  28088213 aaacaacttat-acatgtctataggttgttttgagcttatttccatgagctctccatgatagcttatgaaaacagtttatagc 28088294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 1019600 - 1019645
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccat 202  Q
    ||||||||||| || ||||||||||||| ||||| |||||||||||    
T  1019600 aaacaacttataacatgtctataagttgtttttagcttatttccat 1019645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 30524017 - 30523965
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctct 209  Q
    |||||| ||||||| |||| || ||||||||||| ||||||||||| ||||||    
T  30524017 aaacaaattatgacatgtccattagttgcttttagcttatttccataagctct 30523965  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 27123312 - 27123397
Alignment:
Q  130 acttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctcca 212  Q
    ||||||||||||| ||| ||||| ||||  |||||||||||||| ||||| ||||||| ||| ||||||||||||| |||||||||    
T  27123312 acttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctcca 27123397  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 2996686 - 2996586
Alignment:
Q  127 agcacttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 223  Q
    ||||||| |||||||| ||| ||||| ||||  |||||||||||||| |||| ||||| |  ||| ||||||||| |||  |||||||||||| ||||||    
T  2996686 agcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttat 2996587  T
Q  224 g 224  Q
    |    
T  2996586 g 2996586  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 55547038 - 55547079
Alignment:
Q  161 aacttatgacttgtctataagttgcttttaacttatttccat 202  Q
    |||||||||| ||||||||||||| ||||| |||||||||||    
T  55547038 aacttatgacatgtctataagttgtttttagcttatttccat 55547079  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 2592299 - 2592371
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaa 229  Q
    ||||||||||| |  ||||| ||||||| ||| | ||||||||||| |||||||||| || |||||| |||||    
T  2592299 aaacaacttataatgtgtctgtaagttgttttcagcttatttccataagctctccaaaatagcttatataaaa 2592371  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 14011279 - 14011243
Alignment:
Q  192 cttatttccattagctctccaagattgcttatgtaaa 228  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  14011279 cttatttccataagctctccaagatagcttatgtaaa 14011243  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 5531114 - 5531033
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtttctagc 239  Q
    |||||||||||||  |||| |||||||| ||||| ||||||||||  ||||||||| ||||||||||| || |||||| ||||    
T  5531114 aaacaacttatgatatgtccataagttgttttta-cttatttccagaagctctccaggattgcttatgaaagaagtttttagc 5531033  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 4273367 - 4273426
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagat 216  Q
    ||||| |||||||||||||||||||||| ||| |||||||| | || ||||||| |||||    
T  4273367 aaacagcttatgacttgtctataagttgttttcaacttattgctataagctctcaaagat 4273426  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 10272421 - 10272488
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatg 224  Q
    |||||||||||||| ||||| ||||||| ||| | ||||||| ||| | ||||||||||| |||||||    
T  10272421 aaacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatg 10272488  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 29590623 - 29590673
Alignment:
Q  161 aacttatgacttgtctataagttgcttttaacttatttccattagctctcc 211  Q
    ||||||||||||||| |||||||| ||| ||||||||||||| | ||||||    
T  29590623 aacttatgacttgtccataagttgttttcaacttatttccataaactctcc 29590673  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 33533549 - 33533593
Alignment:
Q  177 ataagttgcttttaacttatttccattagctctccaagattgctt 221  Q
    |||||||| ||| ||||||||||||| ||||||||||||| ||||    
T  33533549 ataagttgttttcaacttatttccataagctctccaagatagctt 33533593  T

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Target: scaffold0153 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 6484 - 6551
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatg 224  Q
    ||||||| |||||| ||||||||||||| ||| |  |||||||||| ||||||||  |||||||||||    
T  6484 aaacaacctatgacatgtctataagttgttttcagtttatttccataagctctccgggattgcttatg 6551  T

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Target: scaffold0153; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 13504 - 13571
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatg 224  Q
    ||||||| |||||| ||||||||||||| ||| |  |||||||||| ||||||||  |||||||||||    
T  13504 aaacaacctatgacatgtctataagttgttttcagtttatttccataagctctccgggattgcttatg 13571  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 43504831 - 43504765
Alignment:
Q  157 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 223  Q
    |||||||||| ||||||| |||||| || ||| | ||||||||||| || |||||||||| ||||||    
T  43504831 aaacaacttacgacttgtttataagctgttttcagcttatttccataagttctccaagatagcttat 43504765  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 8806759 - 8806811
Alignment:
Q  158 aacaacttatgacttgtctataagttgcttttaacttatttccattagctctc 210  Q
    ||||||||||||| |||||||||| ||| ||||||||| ||| || |||||||    
T  8806759 aacaacttatgacatgtctataagctgcatttaacttacttctataagctctc 8806811  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 12361266 - 12361218
Alignment:
Q  163 cttatgacttgtctataagttgcttttaacttatttccattagctctcc 211  Q
    |||||||| |||| ||||| || ||| ||||||||||||||||||||||    
T  12361266 cttatgacatgtccataagctgttttcaacttatttccattagctctcc 12361218  T

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