View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_high_16 (Length: 396)
Name: NF11530_high_16
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_high_16 |
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| [»] scaffold0119 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 76 - 364
Target Start/End: Original strand, 1292590 - 1292878
Alignment:
| Q |
76 |
gtataaagagataaattaccatccaaattaaaaccaaagtatgaacgcattagattccaaattaaaagttattaaagtgtataagttgagttttcacgcg |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1292590 |
gtataaagagataaattaccatccaaattaaaaccaaagtatgaacgcattagattccaaattaaaagttattaaagtgtataagttgagttttcacgcg |
1292689 |
T |
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| Q |
176 |
tggcatccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccacacttacttcaatatccaatattcacaactcatatagtttcatt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1292690 |
tggcatccactaatttaattctataaatacctttatccaaaggcgtgtgtcttccacacttacttcaatatccaatattcacaactcatatagtttcatt |
1292789 |
T |
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| Q |
276 |
tcacatatttagatctatggcagaaattcagcaccaccatgcagctacactagcacgtagtgaatcaaaagtgtacagcatggatgttg |
364 |
Q |
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| T |
1292790 |
tcacatatttagatctatggcagaaattcagcaccaccatgcagctacactagcacgtagtgaatcaaaagtgtacaacatggatgttg |
1292878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 1292433 - 1292493
Alignment:
| Q |
15 |
atgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact |
75 |
Q |
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| T |
1292433 |
atgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact |
1292493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 139 - 364
Target Start/End: Complemental strand, 13937 - 13716
Alignment:
| Q |
139 |
aaaagttattaaagtgtataagttgagttttcacgcgtggcatccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccacacttac |
238 |
Q |
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| T |
13937 |
aaaagttattaaagtgtatacgttgagttttcacgcgtggcacccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccacactt-- |
13840 |
T |
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| Q |
239 |
ttcaatatccaatattcacaactcatatagtttcatttcacatatttagatctatggcagaaattcagcaccaccatgcagctacactagcacgtagtga |
338 |
Q |
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| T |
13839 |
--caatatccaatattcacaactcatatagtttcatttcacatatttagatctatggcagaaattcagcaccaccatgcagctacactagcacgtagtga |
13742 |
T |
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| Q |
339 |
atcaaaagtgtacagcatggatgttg |
364 |
Q |
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| T |
13741 |
atcaaaagtgtacagcatggatgttg |
13716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 139 - 364
Target Start/End: Complemental strand, 19617 - 19396
Alignment:
| Q |
139 |
aaaagttattaaagtgtataagttgagttttcacgcgtggcatccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccacacttac |
238 |
Q |
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| T |
19617 |
aaaagttattaaagtgtatacgttgagttttcacgcgtggcacccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccacactt-- |
19520 |
T |
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| Q |
239 |
ttcaatatccaatattcacaactcatatagtttcatttcacatatttagatctatggcagaaattcagcaccaccatgcagctacactagcacgtagtga |
338 |
Q |
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| T |
19519 |
--caatatccaatattcacaactcatatagtttcatttcacatatttagatctatggcagaaattcagcaccaccatgcagctacactagcacgtagtga |
19422 |
T |
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| Q |
339 |
atcaaaagtgtacagcatggatgttg |
364 |
Q |
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| T |
19421 |
atcaaaagtgtacagcatggatgttg |
19396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 14158 - 14080
Alignment:
| Q |
76 |
gtataaagagataaattaccatccaaattaaaaccaaagtatgaacgcattagattccaaattaaaagttattaaagtg |
154 |
Q |
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| T |
14158 |
gtataaagagataaattaccatccaaattaaaatcaaagtatgaacgcattagattccaaattaaaagttattaaagtg |
14080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 19838 - 19760
Alignment:
| Q |
76 |
gtataaagagataaattaccatccaaattaaaaccaaagtatgaacgcattagattccaaattaaaagttattaaagtg |
154 |
Q |
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| T |
19838 |
gtataaagagataaattaccatccaaattaaaatcaaagtatgaacgcattagattccaaattaaaagttattaaagtg |
19760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 14316 - 14256
Alignment:
| Q |
15 |
atgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact |
75 |
Q |
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| T |
14316 |
atgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact |
14256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 19996 - 19936
Alignment:
| Q |
15 |
atgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact |
75 |
Q |
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| T |
19996 |
atgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact |
19936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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