View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_high_17 (Length: 393)
Name: NF11530_high_17
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 161 - 375
Target Start/End: Original strand, 41535351 - 41535560
Alignment:
| Q |
161 |
gtcagcaggtacgggaagaagaaagcaatgggatgacgatctgttgaccatgacctcagtaactttgtctttcagcggagagcaaagagtctaaactaaa |
260 |
Q |
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| T |
41535351 |
gtcagcaggtacgggaagaagaaagcaatgggatgacgatctgttgaccatgacctcggtaactttgtctttcagcggagagcaaagagtctaa-----a |
41535445 |
T |
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| Q |
261 |
ctctcgaaactcgcattgcttaaacctccgttggataagtgtttgccaaaccaataccgcttcgcaaagcatggtggttgtggaaattctaaagctagta |
360 |
Q |
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| T |
41535446 |
ctctcgaaactggcattgcttaaacctccgttggataagtgtttgccaaaccaataccgcttcgcaaagcatggtggttgtggaaattctgaagctagta |
41535545 |
T |
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| Q |
361 |
tatcaagcttctgtg |
375 |
Q |
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| T |
41535546 |
tatcaagcttctgtg |
41535560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 41535211 - 41535323
Alignment:
| Q |
16 |
cagtactaaaccagaacgacaaaaacaattaattgtatcattattcttatttatggtaagtacaaatttatagtagttagtagttacaggaactaaagga |
115 |
Q |
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| T |
41535211 |
cagtactaaaccagaacgacaaaaacaattaatggtatcattattcttatttatggtaagtacaaatttatagtag--------tacaagaactaaagga |
41535302 |
T |
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| Q |
116 |
atggagtatcatttttctttt |
136 |
Q |
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| T |
41535303 |
atggagtatcatttttctttt |
41535323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 26135617 - 26135535
Alignment:
| Q |
291 |
ttggataagtgtttgccaaaccaataccgcttcgcaaagcatggtggttgtggaaattctaaagctagtatatcaagcttctg |
373 |
Q |
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| T |
26135617 |
ttggataagcgtttgccaatctaataccgcgtcccaatgcacggttgccgtgaaaattcagaagctagtatatcaagcttctg |
26135535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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