View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_high_21 (Length: 363)
Name: NF11530_high_21
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 9606092 - 9605997
Alignment:
| Q |
1 |
ctgttgctgcttttctggtctgtggttgctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctttgcagccttcagg |
96 |
Q |
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| T |
9606092 |
ctgttgctgcttttctggtctgtggttgctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctgtgcagccttcagg |
9605997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 9593412 - 9593242
Alignment:
| Q |
19 |
tctgtggttgctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctttgcagccttcaggcttgttttgtgcgttttcctcg |
118 |
Q |
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| T |
9593412 |
tctgcggttgctgtttggcagtgggggttctggaagtgtcttgagtctatcccaccgtttttatgtgcagctttcaggcttgttttgtgcggcttcct-- |
9593315 |
T |
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| Q |
119 |
cgtggcctatcaaggtttgctgtagtcgtgttttcttctg-tttgattggtggaggcagttggagtatttgctg |
191 |
Q |
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| T |
9593314 |
cgtggcctatcaaggtttggtgcagtcgtgttttc-tctgttttgatttgtggaggcagctggagtatttgctg |
9593242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 9569810 - 9569997
Alignment:
| Q |
1 |
ctgttgctgcttttctggtctgtggttgctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctttgcagccttcaggcttg |
100 |
Q |
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| T |
9569810 |
ctgttgctgtctttctggtatgtggttactgtttggcagtgggggttctggaagtttcttcggtcgatcccaccgtttttctgggcagcctccaggcttg |
9569909 |
T |
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| Q |
101 |
ttttgtgcgttttcctcgcgtggcctatcaaggtttgctgtagtcgtgttttcttctgtttgattggtggaggcagttggagtatttgct |
190 |
Q |
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| T |
9569910 |
ttttttgcggcttcct--tgtggcctggcaaagtttaccgctgtcgtgttttcttctgtttgattggtggatacagttagagtatttgct |
9569997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 344
Target Start/End: Original strand, 9570090 - 9570173
Alignment:
| Q |
261 |
tagtcgagagtcccttttggttgtattgctttacaaattttattttgaatgtttaatctatttcgatttgcaaacttatctgat |
344 |
Q |
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| T |
9570090 |
tagtcgagagacccttttggttgtattgctttgtcaattttattttgaatgtttaatctgtttccatttgcaaacttatctgat |
9570173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 9581590 - 9581530
Alignment:
| Q |
47 |
tctggaagtttcttgggtcaatcccactgtttttctttgcagccttcaggcttgttttgtg |
107 |
Q |
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| T |
9581590 |
tctggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtgtg |
9581530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 9587285 - 9587225
Alignment:
| Q |
47 |
tctggaagtttcttgggtcaatcccactgtttttctttgcagccttcaggcttgttttgtg |
107 |
Q |
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| T |
9587285 |
tctggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtgtg |
9587225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 37895976 - 37896030
Alignment:
| Q |
296 |
aattttattttgaatgtttaatctatttcgatttgcaaacttatctgatgtccat |
350 |
Q |
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| T |
37895976 |
aattttattttgaatgtttagtctctttctttttgcgaacttatctgatttccat |
37896030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 29145698 - 29145770
Alignment:
| Q |
286 |
ttgctttacaaattttattttgaatgtttaatctatttcgatttgcaaacttatctgatgtccatctcattga |
358 |
Q |
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| T |
29145698 |
ttgctttatcaattttattttgaatgttttttctctttccatttacaaactgatttgatttccatatcattga |
29145770 |
T |
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