View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11530_high_30 (Length: 310)
Name: NF11530_high_30
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_high_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 1368914 - 1368630
Alignment:
| Q |
16 |
attcttactctttagaagtgctctccgaactaaatatcctctaattgaagcctggatgat-atcgcagcaaattctggaggattgacatccatcgtactc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
1368914 |
attcttactctttagaagtgctctccgaactaaatatcctctaattgaagcctggatgattatcgcagcagattctggaggattaacatccatcgtactc |
1368815 |
T |
|
| Q |
115 |
tcaatttttgtgataattatttctggcatctctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctcattgg |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1368814 |
tcaatttcggtgataattatttctggcatctctgagcatgcatcggaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctcattgg |
1368715 |
T |
|
| Q |
215 |
tggattctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
299 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1368714 |
tggattccttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
1368630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 24840976 - 24840896
Alignment:
| Q |
219 |
ttctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
299 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||||||| ||||||||||||| | || ||||| ||||||||||||||| |
|
|
| T |
24840976 |
ttctttaatgtatacttctattgtggcgacaaaactatcagcaacattcacgttaggtaactgacccttagttacattcat |
24840896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 23571757 - 23571563
Alignment:
| Q |
16 |
attcttactctttagaagtgctctccgaactaaatatcctctaattgaagcctggatgat-atcgcagcaaattctggaggattgacatccatcgtactc |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || | |||||| |||| |||||||||||||||| | ||||| |
|
|
| T |
23571757 |
attcttactatttagaagtgctctccgaaccaaatatcctctaattgaagcctggattattaatgcagcagattccggaggattgacatccaccatactc |
23571658 |
T |
|
| Q |
115 |
tcaatttttgtgataattatttctggcatctctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctc |
209 |
Q |
| |
|
||||||| ||||||||| || ||||||| || |||||||||| ||||||||| | |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
23571657 |
tcaatttcggtgataattgttcctggcatatccgagcatgcattggaggataactgtagcttctcattagagaaatctgttgtacaaatcttctc |
23571563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 18179988 - 18180068
Alignment:
| Q |
219 |
ttctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
299 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
18179988 |
ttctttaatgtattcttccattgtagcaacaaaactgtcagcaacattcacgttcggtaactgacacttagttacattcat |
18180068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 5646347 - 5646419
Alignment:
| Q |
220 |
tctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagtta |
292 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | || ||||| |||||||| |
|
|
| T |
5646347 |
tctttcatgtattcttccattgtggcaacaaaactatcagcaacattcacgttaggtaactgacccttagtta |
5646419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 26375666 - 26375603
Alignment:
| Q |
236 |
ccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
299 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
26375666 |
ccattgtggcaataaaactatcagcaacattcactttcggtaactgacacttagttacattcat |
26375603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 7657775 - 7657611
Alignment:
| Q |
47 |
aaatatcctctaattgaagcctggatgat-atcgcagcaaattctggaggattgacatccatcgtactctcaatttttgtgataattatttctggcatct |
145 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| |||| || ||||||||||||| | || ||||| | | |||| |||| |||||||||||| |
|
|
| T |
7657775 |
aaatatcctctaattgaagcctggatgattatcacagcagattccggtggattgacatccaccttattctcagtctcggtgacaattgtttctggcatct |
7657676 |
T |
|
| Q |
146 |
ctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctca |
210 |
Q |
| |
|
| ||||| |||| ||||||||| ||||||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
7657675 |
ccgagcagacatcggaggataactgcggcttttcattagagaaatctgttgtacaaatcttctca |
7657611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 28660058 - 28660106
Alignment:
| Q |
222 |
tttaatgtattcttccattgtggcaacaaaactatcaacaacattcacg |
270 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
28660058 |
tttaatgtattcttccaatgtggcaccaaaactatcagcaacgttcacg |
28660106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 52900523 - 52900489
Alignment:
| Q |
218 |
attctttaatgtattcttccattgtggcaacaaaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
52900523 |
attctttaatgtattcttccattgtggcaacaaaa |
52900489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University