View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11530_high_31 (Length: 297)
Name: NF11530_high_31
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_high_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 5845422 - 5845142
Alignment:
| Q |
1 |
ttgcaagatttgagattgatgagagtgaatttagacacccaattgttagggaggtttgtaggttgatttcacttaggtcaaattggaatcctaaatttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5845422 |
ttgcaagatttgagattgatgagagtgaatttagacacccaattgttagggaggtttgtaggttgatttcacttaggtcaaattggaatcctaaatttga |
5845323 |
T |
|
| Q |
101 |
agaaaatttgaggcatttattaaggagtcttaatcctcgacttgtttgtgctgttttgcggtctcaggatgatgaaaggattgctttgga-nnnnnnnac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5845322 |
agaaaatttgaggcatttattaaggagtcttaatcctcgacttgtttgtgctgttttgcggtctcaggatgatgaaaggattgctttggattttttttac |
5845223 |
T |
|
| Q |
200 |
tgggctgataggcaatggcggtataggcatgatgctattgtgtactatacgatgttggatatacttagcaagaccaggttg |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5845222 |
tgggctgataggcaatggcggtataggcatgatgctattgtgtactatacgatgttggatatacttagcaagaccaggttg |
5845142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University