View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_high_35 (Length: 285)
Name: NF11530_high_35
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_high_35 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 46040125 - 46039841
Alignment:
| Q |
1 |
gaaattccagcttcagatatagctagtacttctttagaagatcaacaccaacatgttgaaaacacaggaaatatcgatatgtcatcaattggaaagacaa |
100 |
Q |
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| T |
46040125 |
gaaattccagcttcagatatagctagtacttctttagaagatcaacaccaacatgttgaaaacacaggaaatatcgatatgtcatcaattggaaagacaa |
46040026 |
T |
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| Q |
101 |
gattttttgtggtgagagaaagacaaattgacaaagaccattccctttcactgttagaaaagaaattccgcttcgaaattgatggtttgcttgaggagaa |
200 |
Q |
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| T |
46040025 |
gattttttgtggtgagagaaagacaaattgacaaagaccattccctttcactgttagaaaagaaattccgcttcgaaattgatggtttgcttgaggagaa |
46039926 |
T |
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| Q |
201 |
tttagaattctggttgaggtttagcacttcagttcatcaaattcaaaagttccaacaatctttacaggacttaaaagtagaacta |
285 |
Q |
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| T |
46039925 |
tttagaattctggttgaggtttagcacttcagttcatcaaattcaaaagttccaacaatctttacaggacttaaaagtagaacta |
46039841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 27976884 - 27976949
Alignment:
| Q |
220 |
tttagcacttcagttcatcaaattcaaaagttccaacaatctttacaggacttaaaagtagaacta |
285 |
Q |
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| T |
27976884 |
tttagcacatcagttcatcagattcaaaagtttcaaaactcaatacaagacttaaaagtagaacta |
27976949 |
T |
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