View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11530_high_37 (Length: 265)

Name: NF11530_high_37
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11530_high_37
NF11530_high_37
[»] chr7 (10 HSPs)
chr7 (1-251)||(7327975-7328225)
chr7 (1-203)||(7311233-7311435)
chr7 (1-95)||(21210504-21210598)
chr7 (17-99)||(35205963-35206045)
chr7 (132-188)||(20456359-20456415)
chr7 (16-76)||(36260225-36260285)
chr7 (33-104)||(22473213-22473284)
chr7 (35-101)||(21218765-21218831)
chr7 (139-192)||(36260106-36260159)
chr7 (219-247)||(7311481-7311509)
[»] scaffold0128 (2 HSPs)
scaffold0128 (33-104)||(25562-25633)
scaffold0128 (33-104)||(8513-8584)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 7328225 - 7327975
Alignment:
Q  1 tccaagacccgtcgtctccaaagtctggcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaac 100  Q
    ||||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328225 tccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaac 7328126  T
Q  101 atttgatgaatgtgtcgactcctcagcaccaggagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaattcattaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328125 atttgatgaatgtgtcgactcctcagcaccaggagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaattcattaata 7328026  T
Q  201 atactagcagtattggtaggaatccgattgcgtgccaaccagttaacagtg 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328025 atactagcagtattggtaggaatccgattgcgtgccaaccagttaacagtg 7327975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 7311233 - 7311435
Alignment:
Q  1 tccaagacccgtcgtctccaaagtctggcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaac 100  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||||||||||  ||||||||| ||||||||||| |||||||||||||||||||||||    
T  7311233 tccaagaccggtcgtctccaaattctgtcatcttccatataacaaaatctgttccgttgaaatcttgagaaaagcagaaggagttcatcaacacacaaac 7311332  T
Q  101 atttgatgaatgtgtcgactcctcagcaccaggagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaattcattaata 200  Q
    | ||||| ||||||||||||  |||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||    
T  7311333 acttgataaatgtgtcgacttgtcagcacttggagggagcatcaactttgtgtatgtctcagtccctatatgtagtgaaataatcacaaattcataaata 7311432  T
Q  201 ata 203  Q
    |||    
T  7311433 ata 7311435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 21210504 - 21210598
Alignment:
Q  1 tccaagacccgtcgtctccaaagtctggcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacaca 95  Q
    ||||||||  ||| |||||||| | || ||||||||||||||||||||| |||  ||||||||||||| ||| ||||||| ||||| | ||||||    
T  21210504 tccaagacttgtcatctccaaactttgtcatcttccatataacaaaatcagttccgttgaaatcatgataaaggcataagaagttcctaaacaca 21210598  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 35205963 - 35206045
Alignment:
Q  17 tccaaagtctggcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaa 99  Q
    |||||| |||| ||||||||||||||||||||| |||   |||||||||||| |||| || ||||||||| ||| ||||||||    
T  35205963 tccaaattctgtcatcttccatataacaaaatcagttccattgaaatcatgataaaaacaaaaggagttcctcagcacacaaa 35206045  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 20456415 - 20456359
Alignment:
Q  132 ggagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcaca 188  Q
    |||||| |||||||||||||||||||||| || |||||||  || ||||||||||||    
T  20456415 ggagggggcatcaactttgtgtatgtctcagtacctagatcaagggaaacaatcaca 20456359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 36260285 - 36260225
Alignment:
Q  16 ctccaaagtctggcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagca 76  Q
    ||||||| |||  ||||||||||||||||||||| ||||| ||| |||||| |||||||||    
T  36260285 ctccaaattcttccatcttccatataacaaaatcagttttcttgtaatcattagaaaagca 36260225  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 22473213 - 22473284
Alignment:
Q  33 ttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacattt 104  Q
    ||||||||||||||||| ||||  || ||||||||| |||  || | |||||||||||| ||||||||||||    
T  22473213 ttccatataacaaaatcagtttcttttaaatcatgataaacacacagggagttcatcaatacacaaacattt 22473284  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 21218765 - 21218831
Alignment:
Q  35 ccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaaca 101  Q
    ||||||||| ||||| |||   |||||||| ||| |||| || ||||||||||||||||||||||||    
T  21218765 ccatataaccaaatcagttccattgaaatcgtgataaaaacaaaaggagttcatcaacacacaaaca 21218831  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 36260159 - 36260106
Alignment:
Q  139 gcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaatt 192  Q
    |||||||||||||||||||||| ||  | ||||  |||||||||||||||||||    
T  36260159 gcatcaactttgtgtatgtctctgtttccagatcaagtgaaacaatcacaaatt 36260106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 7311481 - 7311509
Alignment:
Q  219 ggaatccgattgcgtgccaaccagttaac 247  Q
    |||||||||||||||||||||||||||||    
T  7311481 ggaatccgattgcgtgccaaccagttaac 7311509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 25633 - 25562
Alignment:
Q  33 ttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacattt 104  Q
    ||||||||||||||||| ||||  || ||||| ||| |||  |||| |||||||||||||||||||||||||    
T  25633 ttccatataacaaaatcagtttcctttaaatcgtgataaacacatagggagttcatcaacacacaaacattt 25562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 8584 - 8513
Alignment:
Q  33 ttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacattt 104  Q
    ||||||||||||||||| ||||  || ||||| ||| |||  |||| ||||||||| |||||||||||||||    
T  8584 ttccatataacaaaatcagtttcctttaaatcttgataaacacatagggagttcattaacacacaaacattt 8513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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